Details from NCBI annotation

Gene Symbol Paf1
Gene Name Paf1, RNA polymerase II associated factor, homolog (S. cerevisiae), transcript variant X5
Entrez Gene ID 101698302

Database interlinks

Part of NW_004624794.1 (Scaffold)

For more information consult the page for NW_004624794.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

PAF1 ENSCPOG00000011352 (Guinea pig)

Gene Details

Paf1, RNA polymerase II associated factor, homolog (S. cerevisiae)

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000010207, Guinea pig)

Protein Percentage 99.07%
CDS Percentage 94.64%
Ka/Ks Ratio 0.01928 (Ka = 0.005, Ks = 0.2591)

PAF1 ENSG00000006712 (Human)

Gene Details

Paf1, RNA polymerase II associated factor, homolog (S. cerevisiae)

External Links

Gene Match (Ensembl Protein ID: ENSP00000221265, Human)

Protein Percentage 98.12%
CDS Percentage 91.46%
Ka/Ks Ratio 0.01714 (Ka = 0.0085, Ks = 0.4945)

Paf1 ENSMUSG00000003437 (Mouse)

Gene Details

Paf1, RNA polymerase II associated factor, homolog (S. cerevisiae)

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000003529, Mouse)

Protein Percentage 98.32%
CDS Percentage 90.28%
Ka/Ks Ratio 0.01245 (Ka = 0.0075, Ks = 0.6021)

Paf1 ENSRNOG00000019746 (Rat)

Gene Details

Paf1, RNA polymerase II associated factor, homolog (S. cerevisiae) (Paf1), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000026778, Rat)

Protein Percentage 98.69%
CDS Percentage 91.03%
Ka/Ks Ratio 0.01069 (Ka = 0.0058, Ks = 0.5432)

Genome Location

Sequence Coding sequence

Length: 1608 bp    Location: 12725124..12719873   Strand: -
>XM_004859124.1
ATGGCGCCCACCATCCAAACCCAGGCCCAGCGGGAGGATGGCCACAGGCCCAATTCCCACCGGACTCTGCCTGAGAGGTCTGGAGTGGTCTGCCGTGTCAAGTACTGCAATAGTCTCCCAGACATCCCCTTCGACCCTAAATTCATCACCTACCCCTTTGACCAGAACAGGTTTGTCCAGTACAAAGCGACTTCCTTGGAGAAACAGCACAAACACGATCTCCTGACTGAGCCAGACCTTGGGGTCACCATTGACCTCATCAACCCTGACACCTACCGCATTGATCCCAATGTTCTCCTGGATCCAGCTGATGAGAAGCTTTTGGAAGAAGAGATTCAGGCCCCCACCAGTTCTAAGAGGTCCCAGCAGCATGCAAAGGTGGTGCCATGGATGCGTAAGACAGAGTACATCTCCACTGAGTTCAATCGTTATGGCATCTCTAATGAGAAGCCTGAGGTCAAGATTGGAGTTTCTGTGAAGCAACAGTTCACCGAGGAGGAAATATATAAAGATAGGGATAGCCAGATCACAGCCATTGAGAAGACTTTTGAAGATGCCCAGAAGTCGATCTCCCAACACTACAGCAAGCCCCGAGTGACACCAGTGGAGGTCATGCCTGTCTTCCCAGACTTTAAGATGTGGATCAACCCATGTGCTCAGGTCATCTTTGACTCAGACCCAGCACCCAAAGACACAAGTGGAGCAGCTGCCTTAGAGATGATGTCTCAGGCCATGATCAGGGGCATGATGGATGAGGAAGGGAACCAGTTTGTGGCCTATTTCCTGCCTGTGGAAGAGACACTGAAAAAACGAAAACGAGATCAAGAGGAGGAGATGGACTATGCACCAGATGATGTGTATGACTACAAGATTGCTCGGGAATACAACTGGAATGTGAAGAACAAGGCTAGCAAGGGCTACGAGGAGAACTACTTCTTCATTTTCCGAGAGGGTGATGGGGTGTACTACAATGAGTTGGAGACCAGGGTCCGTCTTAGTAAGCGGCGAGCCAAGGCTGGGGTTCAGTCAGGTACCAACGCCCTCCTTGTGGTCAAACATCGAGACATGAATGAGAAGGAATTAGAAGCCCAGGAGGCACGGAAGGCTCAGCTGGAAAACCATGAACCCGAGGAGGAAGAAGAGGAGGAGATGGAGGCAGAAGAAAAAGAAGCTGGGGTCTCAGATGAGGAACATGAGAAGGGCAGCAGCAGCGAGAAGGAGGGCAGTGAGGACGAGCGCTCTGGCAGTGAGAGTGAACGGGAGGAGGGTGACAGGGACGAGGCAAGTGACAAGAGTGGCAGTGGTGAGGACGAGAGCAGCGAGGATGAAGCCCGGGCAGCCCGAGACAAAGAGGAGATCTTCGGTAGTGATGCTGACTCGGAGGATGATGCTGACTCAGATGATGAGGACAGAGGACAGGCCCGTGGTGGCAGTGACAATGATTCGGACAGTGGCAGTGACGCAGGTGGCCAGCGCAGCCGGAGCCAGAGCCGGAGTCGCAGCCGCAGTGCCAGCCCCTTTGCCAGTGGCAGTGAGCACTCAGCCCAAGAGGATGGTAGTGAAGCAGCTGCTTCTGAGTCCAGTGAGGCCGACAGTGACAGTGACTGA

Related Sequences

XP_004859181.1 Protein

Paf1 PREDICTED: RNA polymerase II-associated factor 1 homolog isoform X5 [Heterocephalus glaber]

Length: 535 aa      View alignments
>XP_004859181.1
MAPTIQTQAQREDGHRPNSHRTLPERSGVVCRVKYCNSLPDIPFDPKFITYPFDQNRFVQYKATSLEKQHKHDLLTEPDLGVTIDLINPDTYRIDPNVLLDPADEKLLEEEIQAPTSSKRSQQHAKVVPWMRKTEYISTEFNRYGISNEKPEVKIGVSVKQQFTEEEIYKDRDSQITAIEKTFEDAQKSISQHYSKPRVTPVEVMPVFPDFKMWINPCAQVIFDSDPAPKDTSGAAALEMMSQAMIRGMMDEEGNQFVAYFLPVEETLKKRKRDQEEEMDYAPDDVYDYKIAREYNWNVKNKASKGYEENYFFIFREGDGVYYNELETRVRLSKRRAKAGVQSGTNALLVVKHRDMNEKELEAQEARKAQLENHEPEEEEEEEMEAEEKEAGVSDEEHEKGSSSEKEGSEDERSGSESEREEGDRDEASDKSGSGEDESSEDEARAARDKEEIFGSDADSEDDADSDDEDRGQARGGSDNDSDSGSDAGGQRSRSQSRSRSRSASPFASGSEHSAQEDGSEAAASESSEADSDSD