Sequence details NCBI ID: XM_004859104.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Lrfn1
Gene Name leucine rich repeat and fibronectin type III domain containing 1, transcript variant X9
Entrez Gene ID 101721421

Database interlinks

Part of NW_004624794.1 (Scaffold)

For more information consult the page for NW_004624794.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

LRFN1 ENSCPOG00000024527 (Guinea pig)

Gene Details

leucine rich repeat and fibronectin type III domain containing 1

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000020579, Guinea pig)

Protein Percentage 97.02%
CDS Percentage 91.87%
Ka/Ks Ratio 0.03545 (Ka = 0.0137, Ks = 0.3869)

LRFN1 ENSG00000128011 (Human)

Gene Details

leucine rich repeat and fibronectin type III domain containing 1

External Links

Gene Match (Ensembl Protein ID: ENSP00000248668, Human)

Protein Percentage 95.7%
CDS Percentage 89.32%
Ka/Ks Ratio 0.03003 (Ka = 0.0206, Ks = 0.6863)

Lrfn1 ENSMUSG00000030600 (Mouse)

Gene Details

leucine rich repeat and fibronectin type III domain containing 1

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000103923, Mouse)

Protein Percentage 96.6%
CDS Percentage 86.67%
Ka/Ks Ratio 0.02049 (Ka = 0.0175, Ks = 0.856)

Lrfn1 ENSRNOG00000019869 (Rat)

Gene Details

leucine rich repeat and fibronectin type III domain containing 1 (Lrfn1), transcript variant 2, mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000053905, Rat)

Protein Percentage 96.34%
CDS Percentage 86.06%
Ka/Ks Ratio 0.0199 (Ka = 0.0183, Ks = 0.92)

Genome Location

Sequence Coding sequence

Length: 2328 bp    Location: 12663442..12651405   Strand: -
Raw sequence   
>XM_004859104.1
ATGGCTCCGGGCCCCTTTGCCTCGGTGCTCCTCTCGCCGACACCTGCTGCCCTGCCCTTCCTGCTGCTGCTCTGGGCCGGGGCATCTCGCAGTCAGCCGTGTCCGGGCCGCTGCATCTGCCAGAACGTGGCGCCCACGCTGACCATGCTGTGCGCTAAGACCGGCTTGCTCTTCGTGCCGCCGGCCATCGACAGGCGCGTGGTGGAGCTGCGGCTCACCGACAACTTCATCGCTGCTGTGCGCCGCCGAGACTTTGCCAACATGACCAGCCTGGTGCATCTCACTCTCTCCCGGAACACCATCGGCCAGGTGGCACCCGGAGCCTTCGCAGACCTCCGCGCCCTCCGCGCCCTGCACCTCGACAGCAACCGTCTGGCTGAGGTGCGCGGTGACCAGCTTCGCGGCCTGGGCAACCTCCGCCACCTGATCCTTGGCAACAACCAGATCCGCAAGGTGGAGCCCGCCGCCTTTGACGCCTTCCTGTCCACCGTGGAGGACCTGGATCTGTCCTACAATAACTTGGAGGCCCTGCCGTGGGAGGCGGTGGGCCAGATGGTGAACCTCAACACACTCACGCTGGACCACAATCTCATCGACCACATCGCCGAGGGGACCTTCGTGCAGCTGCACAAGCTGGTGCGCCTGGACATGACCTCCAACCGCCTGCACAAACTCCCGCCTGACGGGCTCTTCCTGAGGTCCCAGGGTGGTGGACCCAAGCCACCCACTCCGCTGACTGTCAGCTTCGGCGGAAACCCACTGCACTGCAACTGTGAGCTGCTCTGGCTGCGGCGGCTGACCCGGGAGGACGACCTGGAGACCTGCGCCACCCCAGAGCACCTCACTGACCGTTACTTCTGGTCCATCCCCGAGGAGGAGTTCCTGTGTGAACCCCCGCTGATCACGCGGCAGGCAGGAGGCCGGGCCCTGGTGGTAGAGGGCCAGGCGGTCAGCTTGCGCTGCCGGGCGGTGGGGGACCCTGAACCCGTGGTGCATTGGGTGGCACCTGATGGGCGGCTGCTGGGAAACTCCAGCCGGACCCGCGTCCGGGGGGATGGGACACTGGATGTGACCATTACCACCCTGCGGGATAGTGGCACTTTCACTTGCATTGCTTCCAATGCTGCGGGGGAAGCCACGGCGCCCGTGGAGGTGTGCGTAGTACCTTTGCCACTGATGGCGCCCCCACCAGCTGCCCCGCCGCCTCTCACTGAGCCCGGCTCCTCTGACATCGCCACACCAGGTAGACCTGGTGCCAACGATTCCACTGCTGAGCGCAGGCTGGTGGCGGCGGAGCTCACCTCCAGCTCAGTGCTTATCCGCTGGCCCGCTCAGAGGCCGGTGCCTGGCATCCGCATGTACCAGGTCCAGTACAACAGCTCGGCGGATGACTCCCTGGTCTACAGGATGATCCCGTCCACCAGCCAGACCTTCCTGGTGAATGATCTGGCAGCAGGCCGCGCCTACGACTTGTGCGTTCTGGCAGTCTATGACGATGGGGCCACCGCCCTGCCAGCCACAAGAGTGGTGGGCTGCGTGCAGTTCACCACTGCTGGGGATCCTGCGCCTTGCCGTCCGTTGAGGGCCCATTTCTTGGGCGGCACCATGATCATCGCCATCGGGGGCGTCATTGTCGCCTCAGTCCTCGTTTTTATTGTTCTGCTCATGATTCGCTACAAGGTGTACGGCGACGGGGACAGCCGCCGCGGCAAGGGCACCTCCAGGTCGCCCCCGAGGGTCAGCCACGTGTGCTCCCAGACCAATGGCGCTGGCGCGCAACCAGCTGCTCAGCCCGCGCAGGACCGCTACGAGGCGCTGCGTGAGGTGGCGCCAGGACGCGAGGTGACCGTGCCAGCTGCTGCTGCCGTCGCCGTCGAGGCCAAGGCCACTGCGGCCGAGGCAACTTCCATGGAACCAGAGGTGGTGCTGGGACGCTCGCTGGGCGGCTCAGCCACCTCGCTGTGCCTGCTGCCATCCGAGGAAACTTCTGGGGAGGAGTCTCGAGCAGTGACAGGGCCTCGGAGGAGCCGTTCTGGGGCTCTGGGGCCGCCAGCGTCAGCGCCCCCGACTCTAGCTCTGGTTCCCGGGGGAGCCTCGGCCCGCCCCAGGCCGCAGCAGCGCTACTCCTTCGACGGGGACTACGGGGCGCTCTTCCAGAGCCACAGTTACCCGCGCCGCGCCCGGCGGACAAAGCGCCACCGTTCCACGCCGCACCTGGACGGGGCCGGAGGGGGCGCGGCCGGGGAGGATGGAGACCTGGGGCTGGCCTCCGCCAGGGCGCGCCTGGCCTTTACCAGCACCGAGTGGATGTTGGAGAGTACCGTGTGA

Related Sequences

XP_004859161.1 Protein

Lrfn1 PREDICTED: leucine-rich repeat and fibronectin type III domain-containing protein 1 isoform X9 [Heterocephalus glaber]

Length: 775 aa      View alignments
>XP_004859161.1
MAPGPFASVLLSPTPAALPFLLLLWAGASRSQPCPGRCICQNVAPTLTMLCAKTGLLFVPPAIDRRVVELRLTDNFIAAVRRRDFANMTSLVHLTLSRNTIGQVAPGAFADLRALRALHLDSNRLAEVRGDQLRGLGNLRHLILGNNQIRKVEPAAFDAFLSTVEDLDLSYNNLEALPWEAVGQMVNLNTLTLDHNLIDHIAEGTFVQLHKLVRLDMTSNRLHKLPPDGLFLRSQGGGPKPPTPLTVSFGGNPLHCNCELLWLRRLTREDDLETCATPEHLTDRYFWSIPEEEFLCEPPLITRQAGGRALVVEGQAVSLRCRAVGDPEPVVHWVAPDGRLLGNSSRTRVRGDGTLDVTITTLRDSGTFTCIASNAAGEATAPVEVCVVPLPLMAPPPAAPPPLTEPGSSDIATPGRPGANDSTAERRLVAAELTSSSVLIRWPAQRPVPGIRMYQVQYNSSADDSLVYRMIPSTSQTFLVNDLAAGRAYDLCVLAVYDDGATALPATRVVGCVQFTTAGDPAPCRPLRAHFLGGTMIIAIGGVIVASVLVFIVLLMIRYKVYGDGDSRRGKGTSRSPPRVSHVCSQTNGAGAQPAAQPAQDRYEALREVAPGREVTVPAAAAVAVEAKATAAEATSMEPEVVLGRSLGGSATSLCLLPSEETSGEESRAVTGPRRSRSGALGPPASAPPTLALVPGGASARPRPQQRYSFDGDYGALFQSHSYPRRARRTKRHRSTPHLDGAGGGAAGEDGDLGLASARARLAFTSTEWMLESTV