Details from NCBI annotation

Gene Symbol Upk1a
Gene Name uroplakin 1A, transcript variant X2
Entrez Gene ID 101698162

Database interlinks

Part of NW_004624794.1 (Scaffold)

For more information consult the page for NW_004624794.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

UPK1A ENSCPOG00000003519 (Guinea pig)

Gene Details

uroplakin 1A

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000003181, Guinea pig)

Protein Percentage 93.0%
CDS Percentage 91.7%
Ka/Ks Ratio 0.10276 (Ka = 0.0351, Ks = 0.3414)

UPK1A ENSG00000105668 (Human)

Gene Details

uroplakin 1A

External Links

Gene Match (Ensembl Protein ID: ENSP00000222275, Human)

Protein Percentage 92.22%
CDS Percentage 88.46%
Ka/Ks Ratio 0.05001 (Ka = 0.0351, Ks = 0.7022)

Upk1a ENSMUSG00000006313 (Mouse)

Gene Details

uroplakin 1A

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000006476, Mouse)

Protein Percentage 92.61%
CDS Percentage 88.98%
Ka/Ks Ratio 0.06033 (Ka = 0.0337, Ks = 0.5582)

Upk1a ENSRNOG00000024331 (Rat)

Gene Details

uroplakin 1A (Upk1a), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000036268, Rat)

Protein Percentage 91.79%
CDS Percentage 87.92%
Ka/Ks Ratio 0.04799 (Ka = 0.038, Ks = 0.792)

Genome Location

Sequence Coding sequence

Length: 858 bp    Location: 9981752..9991496   Strand: +
>XM_004858923.1
ATGGCATCTGCAGCAGCAGAGGGAGAGAAGGGGTCTCCGATTGTGGTGGGGCTGCTGGTCATGGGCAACATCATTATTCTGCTATCAGGCCTGGCCCTGTTTGCCGAAACTGTATGGGTGACAGCTGACCAGTACCGCGTGTACCCACTGATGGGCATCTCAGGCAAAGATGATGTCTTCGCTGGAGCCTGGATCGCCATCTTCTGTGGCTTCTCCTTCTTCATGGTGGCCAGCTTCGGTGTGGGAGCAGCCCTCTGCCGCCATCGGTCTATGATCCTCATGTATCTGGTGCTGATGCTCATCATCTACATCTTTGAGTGTGCCTCCTGCATCACATCCTACACCCACCGTGACTATATGGTGTCCAACCCATCCCTGATAACCAAGCAGATGCTGACCTTCTACAGTGCCAACACGGACCAGGGCCAGGAGCTGACTCGCCTTTGGGACCGCATCATGATTGAGCAAGAGTGCTGCGGTACATCTGGCCCCATGGACTGGGTGAGCTACACATCCGCCTTCCAGGCAGCCACTCCGGAGGTAGTGTTCCCCTGGCCCCCGCTGTGCTGTCGCCGGACAGGAAACTTTATCCCCCTCAATGAAGAAGGCTGTCGCGTGGGCCACGTGGACTACCTGTTCATCAAGACCTTTGGGCTTGGTTCCACATCACCTCCCAGGCCCCTGAAGCCTCCTTGGGACATAGACACTGCCATGATCCCCATTGCACAGGGCTGCTTCGAGCACATAGCCCATGCCATCGACAGCTACACGTGGGGCATCTCCTGGTTCGGATTTGCCATCCTGATGTGGACGCTGCCCGTGATGCTGATAGCCATGTATTTCTACACCACACTCTGA

Related Sequences

XP_004858980.1 Protein

Upk1a PREDICTED: uroplakin-1a isoform X2 [Heterocephalus glaber]

Length: 285 aa      View alignments
>XP_004858980.1
MASAAAEGEKGSPIVVGLLVMGNIIILLSGLALFAETVWVTADQYRVYPLMGISGKDDVFAGAWIAIFCGFSFFMVASFGVGAALCRHRSMILMYLVLMLIIYIFECASCITSYTHRDYMVSNPSLITKQMLTFYSANTDQGQELTRLWDRIMIEQECCGTSGPMDWVSYTSAFQAATPEVVFPWPPLCCRRTGNFIPLNEEGCRVGHVDYLFIKTFGLGSTSPPRPLKPPWDIDTAMIPIAQGCFEHIAHAIDSYTWGISWFGFAILMWTLPVMLIAMYFYTTL