Sequence details NCBI ID: XM_004858860.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Scn1b
Gene Name sodium channel, voltage-gated, type I, beta subunit, transcript variant X2
Entrez Gene ID 101709080

Database interlinks

Part of NW_004624794.1 (Scaffold)

For more information consult the page for NW_004624794.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

SCN1B ENSCPOG00000026195 (Guinea pig)

Gene Details

sodium channel, voltage-gated, type I, beta subunit

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000020981, Guinea pig)

Protein Percentage 96.21%
CDS Percentage 93.36%
Ka/Ks Ratio 0.05484 (Ka = 0.0184, Ks = 0.3349)

SCN1B ENSG00000105711 (Human)

Gene Details

sodium channel, voltage-gated, type I, beta subunit

External Links

Gene Match (Ensembl Protein ID: ENSP00000396915, Human)

Protein Percentage 70.64%
CDS Percentage 73.85%
Ka/Ks Ratio 0.16638 (Ka = 0.2319, Ks = 1.3935)

Scn1b ENSMUSG00000019194 (Mouse)

Gene Details

sodium channel, voltage-gated, type I, beta

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000096148, Mouse)

Protein Percentage 98.62%
CDS Percentage 89.91%
Ka/Ks Ratio 0.00822 (Ka = 0.006, Ks = 0.7326)

Scn1b ENSRNOG00000021102 (Rat)

Gene Details

sodium channel, voltage-gated, type I, beta (Scn1b), transcript variant 2, mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000028653, Rat)

Protein Percentage 98.62%
CDS Percentage 89.6%
Ka/Ks Ratio 0.00734 (Ka = 0.0061, Ks = 0.825)

Genome Location

Sequence Coding sequence

Length: 657 bp    Location: 8449709..8440913   Strand: -
Raw sequence   
>XM_004858860.1
ATGGGGACGCTGCTGGCCTTCGTGGTCGGCGCTGCACTAGTGTCCTCGGCCTGGGGGGGCTGTGTGGAGGTGGACTCGGAGACCGAGGCTGTGTATGGGATGACCTTCAAAATTCTGTGCATCTCCTGCAAGCGGCGCAGTGAGACCACGGCTGAGACCTTCACCGAGTGGACCTTCCGCCAGAAGGGGACAGAGGAGTTTGTCAAGATCCTGCGCTATGAAAATGAGGTGCTACAGCTGGAGGAGGATGAACGTTTCGAGGGCCGTGTGGTGTGGAATGGCAGCCGGGGCACTAAGGACCTGCAGGACCTGTCCATCTTCATCACCAATGTCACCTACAACCACTCGGGTGACTACGAATGCCACGTCTACCGCCTGCTCTTCTTTGAGAACTATGAGCACAACACCAGCGTTGTCAAGAAGATCCACCTTGAGGTGGTGGACAAAGCCAACAGAGACATGGCGTCCATCGTGTCCGAGATCATGATGTACGTGCTCATCGTGGTGTTGACGATATGGCTGGTAGCAGAGATGGTTTACTGTTATAAGAAGATCGCCGCCGCCACGGAGGCTGCTGCCCAAGAGAATGCCTCAGAATACCTGGCCATCACCTCAGAGAGCAAGGAGAACTGTACAGGTGTCCAGGTGGCTGAATAG

Related Sequences

XP_004858917.1 Protein

Scn1b PREDICTED: sodium channel subunit beta-1 isoform X2 [Heterocephalus glaber]

Length: 218 aa      View alignments
>XP_004858917.1
MGTLLAFVVGAALVSSAWGGCVEVDSETEAVYGMTFKILCISCKRRSETTAETFTEWTFRQKGTEEFVKILRYENEVLQLEEDERFEGRVVWNGSRGTKDLQDLSIFITNVTYNHSGDYECHVYRLLFFENYEHNTSVVKKIHLEVVDKANRDMASIVSEIMMYVLIVVLTIWLVAEMVYCYKKIAAATEAAAQENASEYLAITSESKENCTGVQVAE