Sequence details NCBI ID: XM_004858797.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Pdcd5
Gene Name programmed cell death 5, transcript variant X2
Entrez Gene ID 101717808

Database interlinks

Part of NW_004624794.1 (Scaffold)

For more information consult the page for NW_004624794.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

PDCD5 ENSCPOG00000000159 (Guinea pig)

Gene Details

programmed cell death 5

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000000139, Guinea pig)

Protein Percentage 87.2%
CDS Percentage 87.2%
Ka/Ks Ratio 0.3815 (Ka = 0.1134, Ks = 0.2973)

PDCD5 ENSG00000105185 (Human)

Gene Details

programmed cell death 5

External Links

Gene Match (Ensembl Protein ID: ENSP00000466214, Human)

Protein Percentage 83.2%
CDS Percentage 84.27%
Ka/Ks Ratio 0.34317 (Ka = 0.1375, Ks = 0.4007)

Pdcd5 ENSMUSG00000030417 (Mouse)

Gene Details

programmed cell death 5

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000113761, Mouse)

Protein Percentage 87.9%
CDS Percentage 83.33%
Ka/Ks Ratio 0.16558 (Ka = 0.1073, Ks = 0.6481)

Genome Location

Sequence Coding sequence

Length: 378 bp    Location: 7482409..7497462   Strand: +
Raw sequence   
>XM_004858797.1
ATGGCAGATGAGGAGCTGGAGGCGCTGAGGAAGCAGAGGTTGGCCGAGCTGCAGGCGAAACACGGGGATCCTAATGATGCAGCACAACAGGAAGCGAAACACAGGGAAGCAGAAATGAGAAACAGTATCTTAGCGCAAGTTCTGGATCAGTCAGCCCGGGCCAGGTTAAGTAACTTAGCACTTGTAAAGCCTGAAAAAACGAAAGCAGTAGAGAATTACCTTATACAGATGGCAAAGTATGGACAGCTAAGTGGGAAGGTCTCAGAACAAGGTTTAATAGAAATCCTTGAAAAAGTAAGCCAACAAACAGAAAAGAAAACAACAGTTAAAAAAAGAAAATACTTCCGACTCGCAGCTATTTGGCTACTGCTGTTCTAA

Related Sequences

XP_004858854.1 Protein

Pdcd5 PREDICTED: programmed cell death protein 5 isoform X2 [Heterocephalus glaber]

Length: 125 aa      
>XP_004858854.1
MADEELEALRKQRLAELQAKHGDPNDAAQQEAKHREAEMRNSILAQVLDQSARARLSNLALVKPEKTKAVENYLIQMAKYGQLSGKVSEQGLIEILEKVSQQTEKKTTVKKRKYFRLAAIWLLLF