Details from NCBI annotation

Gene Symbol Usf1
Gene Name upstream transcription factor 1, transcript variant X1
Entrez Gene ID 101712666

Database interlinks

Part of NW_004624794.1 (Scaffold)

For more information consult the page for NW_004624794.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

USF1 ENSCPOG00000003957 (Guinea pig)

Gene Details

upstream transcription factor 1

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000003574, Guinea pig)

Protein Percentage 98.39%
CDS Percentage 95.7%
Ka/Ks Ratio 0.05441 (Ka = 0.0079, Ks = 0.1456)

USF1 ENSG00000158773 (Human)

Gene Details

upstream transcription factor 1

External Links

Gene Match (Ensembl Protein ID: ENSP00000357000, Human)

Protein Percentage 99.35%
CDS Percentage 93.44%
Ka/Ks Ratio 0.01031 (Ka = 0.003, Ks = 0.2914)

Usf1 ENSMUSG00000026641 (Mouse)

Gene Details

upstream transcription factor 1

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000125729, Mouse)

Protein Percentage 97.74%
CDS Percentage 91.4%
Ka/Ks Ratio 0.02646 (Ka = 0.0105, Ks = 0.3967)

Usf1 ENSRNOG00000004255 (Rat)

Gene Details

upstream transcription factor 1 (Usf1), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000005811, Rat)

Protein Percentage 97.74%
CDS Percentage 90.0%
Ka/Ks Ratio 0.02208 (Ka = 0.0107, Ks = 0.4839)

Genome Location

Sequence Coding sequence

Length: 933 bp    Location: 318524..325166   Strand: +
>XM_004858701.1
ATGAAGGGGCAGCAGAAAACAGCTGAAACAGAAGAGGGAACAGTGCAGATTCAGGAAGGTGCAGTGGCTACTGGGGAGGACCCAACCAGTGTGGCTATTGCCAGCATCCAGTCAGCTGCCACCTTCCCTGACCCCAACGTCAAGTACGTCTTCCGAACTGAGAATGGGGGCCAGGTGATGTACAGGGTGATCCAGGTGTCTGAGGGGCAGCTGGATGGCCAGACTGAGGGCACTGGAGCCATCAGTGGTTACCCTGCCACTCAGTCCATGACCCAGGCGGTGATTCAGGGTGCTTTCACCAGTGAGGATGCAGTTGACACAGAGGGGACAGCTGCTGAGACACATTATACCTACTTCCCCAGCACTGCAGTGGGAGATGGGGCTGGGGGTACCACTTCGGGGAGTACAGCTGCTGTCGTTACTACCCAGGGCTCGGAGGCACTGCTGGGACAGTCGACCCCTCCCGGCACTGGTCAGTTTTTTGTGATGATGTCACCACAAGAAGTATTGCAGGGAGGGAGCCAGCGCTCGATTGCCCCCAGGACCCACCCTTACTCCCCGAAGTCAGAAGCTCCAAGGACCACTCGGGATGAGAAACGCAGGGCTCAGCATAATGAAGTGGAGCGCCGCCGCCGAGACAAGATCAACAACTGGATCGTACAGCTGTCCAAGATCATCCCGGACTGCTCAATGGAGAGTACCAAGTCTGGCCAGAGTAAAGGTGGAATTCTGTCCAAAGCCTGTGATTACATCCAGGAGCTGCGGCAGAGTAACCACCGGCTGTCTGAGGAACTTCAGGGGCTAGATCAGCTGCAGCTGGACAACGATGTGCTTCGACAGCAGGTGGAAGATCTTAAAAATAAGAACCTGCTGCTACGAGCTCAATTGCGGCACCACGGATTAGAGGTTGTCATCAAGAATGACAGCAACTAA

Related Sequences

XP_004858758.1 Protein

Usf1 PREDICTED: upstream stimulatory factor 1 isoform X1 [Heterocephalus glaber]

Length: 310 aa      View alignments
>XP_004858758.1
MKGQQKTAETEEGTVQIQEGAVATGEDPTSVAIASIQSAATFPDPNVKYVFRTENGGQVMYRVIQVSEGQLDGQTEGTGAISGYPATQSMTQAVIQGAFTSEDAVDTEGTAAETHYTYFPSTAVGDGAGGTTSGSTAAVVTTQGSEALLGQSTPPGTGQFFVMMSPQEVLQGGSQRSIAPRTHPYSPKSEAPRTTRDEKRRAQHNEVERRRRDKINNWIVQLSKIIPDCSMESTKSGQSKGGILSKACDYIQELRQSNHRLSEELQGLDQLQLDNDVLRQQVEDLKNKNLLLRAQLRHHGLEVVIKNDSN