Sequence details NCBI ID: XM_004858638.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Col4a2
Gene Name collagen, type IV, alpha 2
Entrez Gene ID 101721657

Database interlinks

Part of NW_004624793.1 (Scaffold)

For more information consult the page for NW_004624793.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

COL4A2 ENSCPOG00000010611 (Guinea pig)

Gene Details

collagen, type IV, alpha 2

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000009528, Guinea pig)

Protein Percentage 81.27%
CDS Percentage 80.89%
Ka/Ks Ratio 0.24855 (Ka = 0.1359, Ks = 0.5467)

COL4A2 ENSG00000134871 (Human)

Gene Details

collagen, type IV, alpha 2

External Links

Gene Match (Ensembl Protein ID: ENSP00000353654, Human)

Protein Percentage 80.51%
CDS Percentage 78.75%
Ka/Ks Ratio 0.17459 (Ka = 0.1359, Ks = 0.7781)

Col4a2 ENSMUSG00000031503 (Mouse)

Gene Details

collagen, type IV, alpha 2

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000033899, Mouse)

Protein Percentage 79.96%
CDS Percentage 77.43%
Ka/Ks Ratio 0.16234 (Ka = 0.1434, Ks = 0.8831)

COL4A2 ENSRNOG00000023972 (Rat)

Gene Details

Protein Col4a2

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000054270, Rat)

Protein Percentage 76.49%
CDS Percentage 73.99%
Ka/Ks Ratio 0.15631 (Ka = 0.1857, Ks = 1.1877)

Genome Location

Sequence Coding sequence

Length: 4968 bp    Location: 2325021..2202157   Strand: -
Raw sequence   
>XM_004858638.1
ATGGGCCCTGTGCTGCGCCGGTGGCTGCTGCTGGGCGCCGTGACAGTGGGGCTCCTGGCCCACAGCGTCTTGGCGGGAGTGAAGAAGCTCGATGTGCCCTGCGGAGGGAGAGACTGCAGCGGCGGCTGCCGGTGCTACCCTGAGAAAGGAGGCCGCGGTCTGCCGGGGCCAGCAGGTCTCCCAGGCTTCCACGGGCCACCAGGACTTCAAGGATTCCCAGGGCTGCAAGGCCGCAAAGGTGACAAGGGCGAGCGAGGAGCTCCCGGGACGCCCGGGCCCAAAGGCGACGTGGGCCCCAGAGGCGTTTCTGGATTCCCCGGAGCCAACGGGATTCCGGGATATCCGGGCCAGGGTGGGCCCAGAGGGAGGCCGGGCTACGACGGCTGCAACGGGACCAGGGGTGACACAGGCCCGCAAGGCCCCTCCGGCTCGGAAGGCTTCCCTGGCACATTCGGGCCCCCAGGACCCAAGGGGCAGAAAGGCGAACCTTATGCACTGTCCAGAGAGGACCAAGACAGATACAGGGGCGAACCCGGAGAGCCTGGGCTGGTTGGCTTCCAGGGCCCTCCCGGCCGCCCTGGGCCCATGGGGCCAATGGGTCCAGTCGGAGCCCCAGGAAGACCGGGCCCCCCCGGACCCCCCGGGCCGAAAGGAGAGCCGGGCAACAGAGGACTTGGTTTTTATGGAGAAAAGGGGGAAAAGGGTGATCAAGGCCAGCCGGGACCCAATGGAATCCCATCGGACACCACTCACCCCATCGTTGCTCCCACCGGCTCCACCATCCACCCTGATATGTATAAGGGTGAAAAGGGCAGTCAGGGAGAACCGGGGTTTAAAGGCATTTCCTACAAGGGAGAAGAAGGGATCATGGGCTTTCCAGGAACACGGGGACCTCCTGGCCTAGATGGGGAGCGTGGATTCCCAGGACAGAAGGGAAGCAAAGGCCGGGACGGCTACCAAGGCCCCGACGGACCCCAGGGATCCAAGGGAGAACTAGGCGAACCCGGCCCCCCAGGACCCCCAGCCTACTCGCCTCACCCCTCCCTGGCCAAAGGTGTCAGAGGGGACCCAGGATTCCCGGGAGCTCACGGGGAGCCAGGAAGCAGGGGCGAGCCAGGAGACCCAGGCCTCCCAGGCCCACAAGGCCCCCCAGGCCTGCCCTCCGTGGACCAAGGTGACAGGACAGGCCGGCCCGGTGAGACAGGGCTCAAAGGCTTCACCGGAGACCGGGGCATCCCTGCACGCTACCCCGGCCCGCCCGGCGCTGACGGAAGGCCAGGCCCTCCAGGACCCCCTGGGCCTGCTGGACCCCCAGGACCCGATGGCTTCCTGTTCGGCCTCAAAGGAGCACAGGGGAGCCGGGGCTACGCCGGGCTTCCGGGCACCCCGGGGGTGAATGGACAGAAAGGACGCAAAGGTGACCCTGGGAACTGCAAATGTGCCGAAAGCGATCAGTTCCCCGGGGGGCTTCCAGGACTGCCAGGTCTCAAGGGTTTCCCAGGTGCCAATGGGAAGCCAGGCTGGAAAGGGGAGCCGGGAGACCCCGGCCAGCACGGCATCCCTGGGTTCCCAGGGTTCAAGGGAGCCCCTGGCAGCATCGGGGCACCGGGACCCAAGGGAGCGAAAGGCGACTCCAGGACTGTCACCACCAAAGGTGAGCGGGGACAGCCTGGCATCCCTGGCGTGCACGGGATGAAAGGTGACGACGGGATCCCAGGCCGAGACGGCCTTGACGGCTTCCCTGGCCTCCCCGGGCCCCCCGGTGATGGCATCAGAGGCCCCCCAGGAGACTCTGGTCCCCCAGGAGCACCCGGAACCAAGGGCCCCCCGGGAGAGGTGGGCCCTCCGGGCCTGGGCATGCTGGGCCGCGAGGGCGAGCAGGGTTTCCCAGGAGACGTGGGGCTACCCGGGTCCCCAGGCTTCCCCGGCCCTCCCGGCGCCCCTGGCAGCCCCGGAGAGCTAGACTGTGAAACAGGCGTGAAGAGCCCCACCGGGGGTGACACACAGGAGCCCGTGCAGCCAGGTTGCACTGGAGGCCCCAAGGGATCGCCTGGCCTGCCTGGCCCCCCTGGGCCCCCAGGTGACAAAGGCCCCAGAGGGACCCCAGGATTCCTGGGAGTGGATGGACCACCGGGGCTCAAGGGCTTCCCTGGAGACCCTGGCCGAGAAGGATTCCCAGGACCCCCAGGGTTCATGGGACCCCGAGGATCCAAGGGTGCTGTGGGCCTGCCCGGCCCCGATGGACTCCAGGGCACCAGTGGCCTGCCAGGCCCTGCGGGGCCCCCTGGGGACAGGGGCATTCCCGGAGAGGTTCTGGGGGCCCAGCCCGGGCCCCGAGGAGACACCGGGCTGCCTGGACACCCCGGGCGAAAAGGCCTCCCCGGAGAGCAAGGAGCCCCTGGATTCCGAGGGAGCCAGGGGATGCCCGGAATGCCAGGGCCCAAGGGCCAGCTGGGCTTCCCAGGACCCTCGGGCCTCCCGGGACTGCCCGGACGTGCAGGACAGCATGGATTCCCAGGAGCTCCTGGCCCAGAGGGGCCCTTGGGGCTGCCTGGTGTCTCAGGCAGTGAAGGTCTGCCTGGAGACAGGGGGGACCCTGGCGACACGGGCACCCCCGGCCCTGTGGGCATGAAAGGTCTCGCTGGGGACAGAGGTGACACCGGCCTGGTGGGCGACCAGGGCCGCCCAGGGGACCCCGGGTTTAAAGGGATGGACGGGATGCCGGGGATCCCCGGGCTGAAAGGTGAGCACTGCTTCCCGGGACTAACAGGGCTGCAGGGCCCCCAGGGAGACCCGGGGCAGATTGGATTCCCCGGAGAGAAAGGAGCCGACGGCTGGCCCGGTGTGCCAGGCTTGCCAGGGCTGCGTGGCATCGGCGGACTGCACGGGAACCGTGGGGAGCCTGGCCCCCCGGGGCCCCCTCCTGCCATCATGCCAGGGATGAAGTTCATCAAGGGCGAGAAGGGTGACGAAGGGCCCATGGGGCTGAAGGGGCACCTGGGCTTGAAAGGCCTGCAAGGCATGCCAGGTGTCCCAGGACAGGCGGGTGTCCCAGGGCTGCCCGGAAGGCCTGGCCACATCAAAGGCATCAAAGGGGACATCGGTGTGCCCGGCTCGCCTGGCCTGCCCGGCTTCCCCGGGGTGACCGGTCCACCTGGAGTCATTGGGTTTCCGGGCTTCACAGGCTCACGGGGCGACAAGGGCGCTCCAGGAAGCTCGGGCCTGTATGGCGATGATGGCCTGACCGGGGACTTCGGTGACATTGGGGACACGATCGATTTACCAGGAAGCCCAGGCCTGAAGGGAGAGCGTGGCATCGCGGGGACCCCAGGTCTGAAGGGATTCTTCGGGGAGAGAGGAGCCCACGGCGAGGTCGGCTTCCCTGGCATCACGGGCCTGGCCGGACCACAGGGCCAGCCTGGACTCAAAGGACAGACAGTCACCACGGTTACTGTCCCTGCAGGCGCTGACATGCCCGGAGACCCAGGCTTCCCCGGCCCCTCTGGGGACAGGGGCGACCCCGGAGAGCCCAACACCTTCCCAGGCTCCACGGGCGCCCCTGGACAGAAGGGGGAGCAGGGAGCCCCAGGGGAGCGAGGCCCAGCCGGGAGACCCGGGATGCAAGGCTTCCCTGGCATCAGCCCCCCCTCCAACATCTCAGGGCTGCCGGGCGACGTGGGGTCACCGGGGATCTTCGGCCTGAAAGGTTACCAAGGCCCCCAGGGGCCCCCGGGGCCGGCCGCCCTGCAGGGAAGCAAAGGAGACGCTGGGAGCGGGGGAGCCCCAGGAGTCGTGGGCACCAAAGGCTGGATCGGGGACCAAGGGCCCCAGGGCCGGCCGGGTGTGTTCGGAGTCCCAGGAGAGAAAGGGCCCAGGGGTGAGCCCGGACTCATGGGCAGCACAGGATCCACCGGAGCTGTGGGCGACAGGGGCCCCAAGGGGCCCAAAGGAGACCAGGGATTCCCCGGAGCCCCCGGCTTAGTGGGGTCTCCAGGGATTGCCGGCATCCCCCAGCGGATCACCGCCCCGCCGGGGGCCATGGGTCCCGAGGGCAGGAGGGGTCGTCCCGGGGCGCAGGGAGAGATGGGGCCACAGGGCCCCCCCGGAGACCCAGGTTTCCGCGGGGTGCCAGGGAAGCCCGGGCCCCAGGGACGAGGTGGTGTGTCTGCTCTGCCCGGGTTCCGGGGAGACCCAGGAGCCGTGGGGCACCAGGGCCCGATTGGCCAAGAAGGGGAGCCCGGCCGCCCAGGGAGCCCAGGGCTGCCCGGCATGCCCGGCCGCAGCGTGAGCATCGGCTACCTGCTGGTGAAGCACAGCCAGGCGGACCAGGAGCCCATGTGCCCAGTGGGCATGAACAAGCTGTGGAGCGGCTACAGCCTGCTGTACTTCGAGGGCCAGGAGAAGGCCCACAATCAGGACCTCGGGCTGGCGGGCTCCTGCCTTGCACGCTTCAGCACCATGCCCTTCCTCTACTGCAACCCCGGCGACGTCTGCTACTATGCCAGCCGCAACGACAAGTCCTACTGGCTGTCCACCACCGCCCCGCTGCCCATGATGCCCGTGGCCGAGGACGACATCAAGCCCTACATCAGCCGCTGCTCCGTGTGCGAGGCGCCTGCCACCGCCATCGCGGTGCACAGCCAGGACGTGTCCATACCCCACTGCCCGGCCGGCTGGCGGAGCCTGTGGATCGGGTATTCCTTCCTCATGCACACCGCAGCAGGGGACGAAGGCGGCGGCCAGTCCCTGATGTCACCGGGCAGCTGTCTGGAGGACTTCCGTGCCACGCCGTTCATCGAGTGCAACGGGGGCCGCGGGACCTGCCACTACTTCGCCAACAAGTACAGCTTCTGGCTGACCACCATCCCCGACACCAGCTTCCAGGGCACACCGTCGGCCGACACGCTCAAGGCCGGCCTCATCCGCACGCACATCAGCCGCTGCCAGGTGTGCATGAAGAACTTGTGA

Related Sequences

XP_004858695.1 Protein

Col4a2 PREDICTED: collagen alpha-2(IV) chain [Heterocephalus glaber]

Length: 1655 aa      View alignments
>XP_004858695.1
MGPVLRRWLLLGAVTVGLLAHSVLAGVKKLDVPCGGRDCSGGCRCYPEKGGRGLPGPAGLPGFHGPPGLQGFPGLQGRKGDKGERGAPGTPGPKGDVGPRGVSGFPGANGIPGYPGQGGPRGRPGYDGCNGTRGDTGPQGPSGSEGFPGTFGPPGPKGQKGEPYALSREDQDRYRGEPGEPGLVGFQGPPGRPGPMGPMGPVGAPGRPGPPGPPGPKGEPGNRGLGFYGEKGEKGDQGQPGPNGIPSDTTHPIVAPTGSTIHPDMYKGEKGSQGEPGFKGISYKGEEGIMGFPGTRGPPGLDGERGFPGQKGSKGRDGYQGPDGPQGSKGELGEPGPPGPPAYSPHPSLAKGVRGDPGFPGAHGEPGSRGEPGDPGLPGPQGPPGLPSVDQGDRTGRPGETGLKGFTGDRGIPARYPGPPGADGRPGPPGPPGPAGPPGPDGFLFGLKGAQGSRGYAGLPGTPGVNGQKGRKGDPGNCKCAESDQFPGGLPGLPGLKGFPGANGKPGWKGEPGDPGQHGIPGFPGFKGAPGSIGAPGPKGAKGDSRTVTTKGERGQPGIPGVHGMKGDDGIPGRDGLDGFPGLPGPPGDGIRGPPGDSGPPGAPGTKGPPGEVGPPGLGMLGREGEQGFPGDVGLPGSPGFPGPPGAPGSPGELDCETGVKSPTGGDTQEPVQPGCTGGPKGSPGLPGPPGPPGDKGPRGTPGFLGVDGPPGLKGFPGDPGREGFPGPPGFMGPRGSKGAVGLPGPDGLQGTSGLPGPAGPPGDRGIPGEVLGAQPGPRGDTGLPGHPGRKGLPGEQGAPGFRGSQGMPGMPGPKGQLGFPGPSGLPGLPGRAGQHGFPGAPGPEGPLGLPGVSGSEGLPGDRGDPGDTGTPGPVGMKGLAGDRGDTGLVGDQGRPGDPGFKGMDGMPGIPGLKGEHCFPGLTGLQGPQGDPGQIGFPGEKGADGWPGVPGLPGLRGIGGLHGNRGEPGPPGPPPAIMPGMKFIKGEKGDEGPMGLKGHLGLKGLQGMPGVPGQAGVPGLPGRPGHIKGIKGDIGVPGSPGLPGFPGVTGPPGVIGFPGFTGSRGDKGAPGSSGLYGDDGLTGDFGDIGDTIDLPGSPGLKGERGIAGTPGLKGFFGERGAHGEVGFPGITGLAGPQGQPGLKGQTVTTVTVPAGADMPGDPGFPGPSGDRGDPGEPNTFPGSTGAPGQKGEQGAPGERGPAGRPGMQGFPGISPPSNISGLPGDVGSPGIFGLKGYQGPQGPPGPAALQGSKGDAGSGGAPGVVGTKGWIGDQGPQGRPGVFGVPGEKGPRGEPGLMGSTGSTGAVGDRGPKGPKGDQGFPGAPGLVGSPGIAGIPQRITAPPGAMGPEGRRGRPGAQGEMGPQGPPGDPGFRGVPGKPGPQGRGGVSALPGFRGDPGAVGHQGPIGQEGEPGRPGSPGLPGMPGRSVSIGYLLVKHSQADQEPMCPVGMNKLWSGYSLLYFEGQEKAHNQDLGLAGSCLARFSTMPFLYCNPGDVCYYASRNDKSYWLSTTAPLPMMPVAEDDIKPYISRCSVCEAPATAIAVHSQDVSIPHCPAGWRSLWIGYSFLMHTAAGDEGGGQSLMSPGSCLEDFRATPFIECNGGRGTCHYFANKYSFWLTTIPDTSFQGTPSADTLKAGLIRTHISRCQVCMKNL