Sequence details NCBI ID: XM_004858431.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Cdh20
Gene Name cadherin 20, type 2, transcript variant X1
Entrez Gene ID 101726325

Database interlinks

Part of NW_004624792.1 (Scaffold)

For more information consult the page for NW_004624792.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

CDH20 ENSCPOG00000006022 (Guinea pig)

Gene Details

cadherin 20, type 2

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000005436, Guinea pig)

Protein Percentage 96.88%
CDS Percentage 93.76%
Ka/Ks Ratio 0.06966 (Ka = 0.0151, Ks = 0.2162)

CDH20 ENSG00000101542 (Human)

Gene Details

cadherin 20, type 2

External Links

Gene Match (Ensembl Protein ID: ENSP00000262717, Human)

Protein Percentage 96.75%
CDS Percentage 91.59%
Ka/Ks Ratio 0.04319 (Ka = 0.0153, Ks = 0.3542)

Cdh20 ENSMUSG00000050840 (Mouse)

Gene Details

cadherin 20

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000052078, Mouse)

Protein Percentage 95.01%
CDS Percentage 88.89%
Ka/Ks Ratio 0.04865 (Ka = 0.0242, Ks = 0.4979)

Cdh20 ENSRNOG00000014556 (Rat)

Gene Details

cadherin 20 (Cdh20), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000019907, Rat)

Protein Percentage 95.26%
CDS Percentage 88.97%
Ka/Ks Ratio 0.04798 (Ka = 0.0237, Ks = 0.493)

Genome Location

Sequence Coding sequence

Length: 2406 bp    Location: 7097868..7158940   Strand: +
Raw sequence   
>XM_004858431.1
ATGTGGACTTCTGGTAGAATGAGCAATGCAAAGAGCTGGCTTGGACTTGGCATGTCCTTATACTTCTGGGGATTGATGGACCTTACAACCACTGTCCTCTCGGGCACTCCAACAGCTCAAGGCAAATTAGAAGCACTTCTGTCGCACAAGACACAGTCACATCTGCGAACCAAGAGGAGCTGGGTTTGGAACCAGTTTTTCGTTCTGGAAGAGTATACTGGGACCGACCCTTTGTATGTTGGCAAGCTTCATTCAGATATGGATAGGGGAGATGGATCCATCAAATACATCCTCTCAGGAGAAGGTGCAGGCATCGTGTTTACCATCGACGACACCACTGGCGACATCCATGCCATCCAGAGACTTGATCGAGAGGAAAGAGCCCAGTATACTTTAAGGGCTCAAGCCCTGGACAGGCGGACAGGCCGTCCAATGGAGCCAGAATCAGAGTTCATTATCAAAATACAAGACATCAATGACAATGAACCCAAATTCCTGGATGGACCTTATGTTGCCACTGTGCCAGAAATGTCACCAGTGGGTACCTCTGTTATCCAGGTGACAGCCACAGATGCTGATGATCCGACCTATGGCAACAGTGCCCGGGTAGTGTACAGCATTCTCCAGGGCCAGCCATATTTTTCTGTGGACTCCAAAACAGGTGTAATTAGGACAGCACTCATGAATATGGACAGAGAAGCCAAAGAGTACTATGAAGTGATAATCCAAGCCAAGGACATGGGAGGGCAGCTTGGAGGACTGGCTGGGACTACAACGGTCAACATCACCCTCTCAGATGTCAATGATAACCCACCTCGCTTTCCCCAGAAACATTATCAGATGAGTGTGTTGGAATCAGCTCCAGTTAGCTCAACAGTGGGGAGAGTGTTTGCCAAGGACTTGGATGAAGGAATCAACGCAGAGATGAAATACACTATTGTGGATGGAGATGGTACAGATACCTTTGACATTAACACAGATCCCAATTTCCAAGTTGGCATCATAACTGTGAAGAAGCCTCTGAGTTTTGAAAGCAAGAAAAGCTACACGTTAAAAGTGGAAGGAGCTAATCCTCATCTAGAGATGCGTTTTCTGAACCTGGGCCCATTTCAGGACACAACAACAGTGCACATCAGTGTGGAGGATGTGGATGAGCCCCCTGTGTTTGAACCTGACTTTTATTTGGTGGAAGTGCTGGAAGATGTGGCAATTGGAACAACTATACAGATCATTTCTGCCAAGGATCCAGATGTGACCAACAACTCAATCAGATACTCCATTGACAGAAGCAGTGATCCTGGAAGATTTTTTTATGTTGACATAACAACAGGTGCCCTAATGACCGCAAGACCCCTAGACCGGGAAGAATTTTCTTGGCATAATATCACTGTCCTTGCTATGGAAATGAATAACCCCTCCCAGGTGGGAAGTGTTTCTGTCACAATTGAAGTCTTAGACGTGAATGACAATGCTCCAGAGTTCCCCAGATTCTACGAAGCTTTTGTCTGTGAGAATGCCAAAGCCGGGCAGCTGATCCAGACAGTGAGTGCTGTGGACCAAGATGACCCACACAATGGTCAACATTTCTACTACAGCTTGGCTCCTGAGGCTGCTAACAACCCCAACTTCACCGTAAAGAACAACCAAGATAACACTGCCCGGATTCTCACCAGGAGGTCTGGCTTCCGGCAGCAAGAGCAGAGCATATTTTACCTGCCTATCCTGATAGCAGACAGTGGGCAGCCAGTGTTGAGCAGCACGGGCACACTGACCATTCAGGTGTGCAGCTGCGATGACGACGGCCACGTCATGTCCTGCAGCCCTGAGGCATACATGCTCCCAGTCAGTTTGAGCCGGGGAGCCCTCATCGCCATTCTGGCCTGCATCTTTGTCCTCTTAGTGTTGGTGCTGCTTATTCTGTCCATGAGGAGACACCGGAAACAGCCATACATCATCAACGATGATGAGAACATCCACGAAAACATTGTCCGCTATGACGACGAGGGAGGCGGTGAAGAGGACACCGAGGCCTTTGACATTGCGGCCATGTGGAACCCCCGGGAGGCACAGGCAGCTGCTGCCCCCAAGACGCGGCAAGACATGCTGCCAGAAATTGAGAGTCTCTCCCGCTACGTGCCTCAGACATGCGCCGTCAACAGCACTGTCCACAGCTATGTGCTGGCCAAGCTTTATGAGGCCGACATGGACCTGTGGGCCCCACCCTTCGACTCCCTCCAGACATACATGTTCGAGGGGGACGGCTCTGTAGCAGGGTCGCTGAGCTCCCTACAGTCAGCCACCTCGGACTCAGAGCAGAGCTTCGATTTCCTCACGGACTGGGGACCTCGCTTCCGGAAGCTGGCCGAGCTCTATGGGGCATCGGAAGGGCCCTCGCCCTTGTGGTGA

Related Sequences

XP_004858488.1 Protein

Cdh20 PREDICTED: cadherin-20-like isoform X1 [Heterocephalus glaber]

Length: 801 aa      View alignments
>XP_004858488.1
MWTSGRMSNAKSWLGLGMSLYFWGLMDLTTTVLSGTPTAQGKLEALLSHKTQSHLRTKRSWVWNQFFVLEEYTGTDPLYVGKLHSDMDRGDGSIKYILSGEGAGIVFTIDDTTGDIHAIQRLDREERAQYTLRAQALDRRTGRPMEPESEFIIKIQDINDNEPKFLDGPYVATVPEMSPVGTSVIQVTATDADDPTYGNSARVVYSILQGQPYFSVDSKTGVIRTALMNMDREAKEYYEVIIQAKDMGGQLGGLAGTTTVNITLSDVNDNPPRFPQKHYQMSVLESAPVSSTVGRVFAKDLDEGINAEMKYTIVDGDGTDTFDINTDPNFQVGIITVKKPLSFESKKSYTLKVEGANPHLEMRFLNLGPFQDTTTVHISVEDVDEPPVFEPDFYLVEVLEDVAIGTTIQIISAKDPDVTNNSIRYSIDRSSDPGRFFYVDITTGALMTARPLDREEFSWHNITVLAMEMNNPSQVGSVSVTIEVLDVNDNAPEFPRFYEAFVCENAKAGQLIQTVSAVDQDDPHNGQHFYYSLAPEAANNPNFTVKNNQDNTARILTRRSGFRQQEQSIFYLPILIADSGQPVLSSTGTLTIQVCSCDDDGHVMSCSPEAYMLPVSLSRGALIAILACIFVLLVLVLLILSMRRHRKQPYIINDDENIHENIVRYDDEGGGEEDTEAFDIAAMWNPREAQAAAAPKTRQDMLPEIESLSRYVPQTCAVNSTVHSYVLAKLYEADMDLWAPPFDSLQTYMFEGDGSVAGSLSSLQSATSDSEQSFDFLTDWGPRFRKLAELYGASEGPSPLW