Sequence details NCBI ID: XM_004858417.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Sec11c
Gene Name SEC11 homolog C (S. cerevisiae), transcript variant X1
Entrez Gene ID 101720716

Database interlinks

Part of NW_004624792.1 (Scaffold)

For more information consult the page for NW_004624792.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

SEC11C ENSCPOG00000011924 (Guinea pig)

Gene Details

SEC11 homolog C (S. cerevisiae)

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000010727, Guinea pig)

Protein Percentage 96.88%
CDS Percentage 93.58%
Ka/Ks Ratio 0.07537 (Ka = 0.0175, Ks = 0.2318)

SEC11C ENSG00000166562 (Human)

Gene Details

SEC11 homolog C (S. cerevisiae)

External Links

Gene Match (Ensembl Protein ID: ENSP00000468633, Human)

Protein Percentage 97.4%
CDS Percentage 94.62%
Ka/Ks Ratio 0.06517 (Ka = 0.0123, Ks = 0.1884)

Sec11c ENSMUSG00000024516 (Mouse)

Gene Details

SEC11 homolog C (S. cerevisiae)

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000025394, Mouse)

Protein Percentage 97.92%
CDS Percentage 91.32%
Ka/Ks Ratio 0.02571 (Ka = 0.0099, Ks = 0.3843)

Sec11c ENSRNOG00000017036 (Rat)

Gene Details

SEC11 homolog C (S. cerevisiae) (Sec11c), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000022958, Rat)

Protein Percentage 97.92%
CDS Percentage 90.1%
Ka/Ks Ratio 0.02244 (Ka = 0.0101, Ks = 0.449)

Genome Location

Sequence Coding sequence

Length: 579 bp    Location: 4567229..4584627   Strand: +
Raw sequence   
>XM_004858417.1
ATGGTGCGCGCGGGCGCGGTGGGGACGCATCTCCCCTCATTCGGCCTGGACATATTCGGGGACCTGAGGAAGATGAACAAGCGCCAGCTGTACTACCAGGTTTTAAACTTTGCCATGATCGTGTCTTCTGCACTCATGATATGGAAAGGCTTGATTGTCCTCACAGGCAGCGAGAGCCCCATCGTGGTGGTGCTGAGTGGCAGTATGGAACCAGCCTTTCACAGGGGAGACCTTCTGTTCCTCACAAACTTCCGGGAAGACCCTATTCGAGCTGGTGAAATAGTTGTTTTTAAAGTTGAAGGACGAGACATTCCAATAGTTCACAGAGTAATCAAAGTTCATGAAAAAGATAATGGAGACATCAAATTTCTGACTAAAGGAGATAATAATGAAGTCGATGATAGAGGCTTGTACAAAGAAGGCCAGAACTGGCTGGAAAAGAAAGACGTGGTGGGAAGAGCACGAGGGTTTTTGCCATATGTTGGTATGGTCACCATAATAATGAATGACTATCCAAAATTCAAGTATGCACTTTTGGCTATAATGGGTGCATATGTGTTACTAAAACGTGAATCCTAA

Related Sequences

XP_004858474.1 Protein

Sec11c PREDICTED: signal peptidase complex catalytic subunit SEC11C isoform X1 [Heterocephalus glaber]

Length: 192 aa      View alignments
>XP_004858474.1
MVRAGAVGTHLPSFGLDIFGDLRKMNKRQLYYQVLNFAMIVSSALMIWKGLIVLTGSESPIVVVLSGSMEPAFHRGDLLFLTNFREDPIRAGEIVVFKVEGRDIPIVHRVIKVHEKDNGDIKFLTKGDNNEVDDRGLYKEGQNWLEKKDVVGRARGFLPYVGMVTIIMNDYPKFKYALLAIMGAYVLLKRES