Sequence details NCBI ID: XM_004858311.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Pcdh15
Gene Name protocadherin-related 15
Entrez Gene ID 101703308

Database interlinks

Part of NW_004624791.1 (Scaffold)

For more information consult the page for NW_004624791.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

PCDH15 ENSCPOG00000004846 (Guinea pig)

Gene Details

protocadherin-related 15

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000004361, Guinea pig)

Protein Percentage 88.13%
CDS Percentage 86.43%
Ka/Ks Ratio 0.24504 (Ka = 0.0903, Ks = 0.3687)

PCDH15 ENSG00000150275 (Human)

Gene Details

protocadherin-related 15

External Links

Gene Match (Ensembl Protein ID: ENSP00000354950, Human)

Protein Percentage 81.26%
CDS Percentage 81.36%
Ka/Ks Ratio 0.25569 (Ka = 0.1397, Ks = 0.5464)

Pcdh15 ENSMUSG00000052613 (Mouse)

Gene Details

protocadherin 15

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000101066, Mouse)

Protein Percentage 79.99%
CDS Percentage 75.3%
Ka/Ks Ratio 0.14176 (Ka = 0.1541, Ks = 1.0868)

Pcdh15 ENSRNOG00000000606 (Rat)

Gene Details

protocadherin 15 (Pcdh15), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000000744, Rat)

Protein Percentage 78.35%
CDS Percentage 73.32%
Ka/Ks Ratio 0.14176 (Ka = 0.1741, Ks = 1.2284)

Genome Location

Sequence Coding sequence

Length: 5361 bp    Location: 9042587..9990131   Strand: +
Raw sequence   
>XM_004858311.1
ATGTTTCAACAGTTTTATCTCTGCAAATTTTTAGTTTCATGGATCATCATTGGCTCTCTCTTTGCTGTCTGCTTGGGCCAGTACGATGATGACTGGCAATATGAGGATTGCAAACTAGCTAGGGGAGGCCCACCAGCTACCATAGTTGCTATTGATGAAGAGAGTCGGAATGGTACAATTCTGGTGGACAACATGCTGATAAAAGGCACTGCTGGAGGACGAGACCCAACCATAGAACTCTCTTTGAAAGACAATGTGGATTACTGGGTGCTGCTGGATCCTGTAAAACAAATGCTTTTCCTGAACAGTACCGGTAGAGTTCTGGATAGAGATCCACCAATGAACATACACTCCATTGTTGTGCAAGTCCAGTGCATCAACAAAAAAGTGGGCACAGTTATCTACCATGAAGTAAGAATCGTGGTGAGAGACAGGAATGACAACTCACCCACTTTCAAACACGAAAGCTACTATGCCACTGTGAATGAGCTTACTCCAGTTGGCACCACAATATTTACAGGGTTTTCTGGAGACAATGGAGCGACTGACATAGATGATGGTCCAAATGGACAGATAGAATATGTTATCCAATACAATCCAGAAGATCCTACATCCAATGACACCTTTGAAATTCCCCTCATGTTGACTGGAAATGTAGTGTTAAGGAAGAGGCTCAACTATGAAGATAAGACTCGGTACTTTGTCATCATCCAAGCCAATGACCGTGCACAAAATCTGAATGAAAGACGAGCCACCACTACCACCCTCACAGTGGACATCCTAGATGGAGATGACTTGGGCCCTATGTTTCTTCCTTGTTTCCTTGTGCCAAGCACTCGTGATTGTCGTCCACTCACCTATCAAGCTGCCATACCTGAGTTGAGAACTCCGGAAGAACTGAATCCCATTATTGTTACTCCGCCAATCCAAGCCATTGATCAGGACCGGAATATTCAGCCTTCATCAGATAGACCAGGCATCGTCTACTCCATCCTTGTCGGGACTCCTGAGGATTACCCACAATTTTTCCATATGCATCCCAGGACTGCAGAACTTAGTCTTCTGGAGCCAGTGAACAGAGACTTTCATCAGAAATTTGATTTGGTTATTAAGGCAGAACAGGATAATGGCCACCCCCTTCCTGCCTTTGCCAGTCTACATATTGAAATATTGGATGAAAATAATCAGAGCCCTTATTTCACGATGTCCAGTTATCAAGGCTATGTCTTGGAATCAGCCCCTGTGGGAGCGACCATTTCTGATAATCTGGATTTATCCAGTCCTCTAAGAATTGTTGCTCTGGACAAAGACATAGAAGATGTTCCGTCTGGTGGAGTTCCTACGAAAGACCCAGAGCTTCACCTTTTTCTGAATGACTACACGTCAGTCTTCACCGTCACACAGATGGGTATTATTCGCTACCTCACACTGCTTCAACCAGTGGACAGAGAAGAACAGCAATTTTACACCTTTTCGATAACAGCATTTGATGGTGTACAAGAAAGTGAGCCAGTTGTGGTCAATATTCGAGTGTTGGATGCGAATGATAACACCCCCACCTTCCCTGAAATATCCTATGATATCTACGTTTATACAGACATGAGACCTGGAGACAGTATCATACAGCTCACTGCAGTTGACGCAGATGAAGGGTCAAATGGAGAGATCACATATGAAATCCTGGTCGGGGCTCAGGGAGATTTCATCATCAATAAAACAACAGGGCTGATCACCGTCGCTCCTGGGGTGGAACTGATAGTCGGGCAGACTTACGCGCTCACTGTCCAAGCAACGGATAATGCTCCTCCTGCAGAGAGAAGGCACTCCATCTGCACAGTGTACATAGAAGTGCTTCCTCCAAATAATCAGAGCCCTCCCCGCTTCCCGCAGCTGATGTATAGCCTTGAAATTAGTGAAGCCATGAGGATTGGTGCTGTTTTATTAAATCTACAGGCAACAGATCGAGAAGGAGACCCAATAACATATGCCATCAAGAATGGAGATCCTCAGCGAGTTTTTAATCTTTCAGAAACTACAGGGATTCTAACCTTAGGGAAAGCACTGGACAGGGAAAGCACGGACCGCTACATTCTGATTGTCACAGCTTCGGATGGCAGGCCAGATGGGACCTCAACTGCCACAGTAAATGTGGTGGTAACAGATGTCAATGACAATGCACCAGTGTTTGATCCCTATCTGCCTAGAAATTTATCTGTGGTAGAGGAAGAAGCTAATGCCTTTGTGGGTCAAGTAAGGGCAACAGACCCTGATGCTGGAATAAATGGCCAAGTGCACTACAGTTTGGGTAACTTCAATAATCTCTTTCGCATAACCTCCAATGGGAGCATCTACACAGCTGTGAAACTTAACAGAGAGGTGAGGGACTACTATGAACTTACTGTTGTGGCAACTGATGGAGCAGTACACCCTCGACATTCAACTCTAACACTGGCCATTAAGGTTTTGGATATTGATGATAACAGCCCTGTGTTCACCAATTCAACCTATACTGTAGTTGTTGAGGAGAATCTGCCAACTGGAACTACCTTCCTTCAAATAGAGGCTAAAGATGTTGACCTTGGAGCAAATGTGTCTTATCGCATAAGAAGTCCAGAAGTGAAGCACATTTTTGCACTGCATCCATTTACAGGAGAACTCTCCCTTTTAAGGCGCTTAGATTATGAGGCATTTCCAGATCAGGAAGCAAGCATCACATTTTTGGTGGAAGCATTTGATATTTATGGAACAATGCCACCTGGCATTGCTACTGTCACAGTAATAGTAAAGGATATGAATGATTATCCTCCGGTATTCAGTAAACGAATCTACAAAGGGCTGGTGGCACCAGACGCAGTCAAGGGCACACCGATCACAACAGTTTATGCTGAAGATGCAGACCCTCCTGGGTTACCGGCAAGTCGTGTGAGGTACAGAGTAGATGATGTACAGTTTCCTTACCCTGCCAGTATTTTCGACGTAGAAGAAGATTCTGGAAGAGTAATAACTCGCGTCAATCTCAACGAAGAACCTACAACAATTTTTAAGTTGGTAGTTGTTGCTTTTGATGATGGTGAGCCAGTGATGTCCAGCAGTACCACAGTGAAAATTCTTGTCTTACATCCTGGAGAAATCCCACGCTTCACACAAGAGGAATATAGACCTCCTCCAGTAAGTGAACTTGCAACCAGAGGGACCATGGTCGGTATAATTTCTGCTGCAGCTATCAATCAGAGCATTGTATATTCCATTGTTTCAGGAAATGAAGAAGATAAGTTTGGAATCAATAACATCACAGGTGTTATTTATGTGAATGCCCCACTGGATTATGAGACAAGGACAAGCTATCTACTTCGAGTCCAGGCAGATTCCCTGGAAGTGGTCCTCGCCAATCTCAGAGTTCCTTCAAAAAGCAATACAGCTAAAGTGTATATTGAAATTCAGGATGAAAATGATCACCCTCCAATGTTTCAAAAAAAATTCTACATTGGAGGTGTGTCCGAGGATGCAAGAATGTTTGCTTCTGTGCTCAGAGTAAAGGCTACCGATAAAGATACTGGCAATTATAGTGCCATCGCGTACAGGCTCATAATACCACCAATCAAAGAGGGAAAAGAAGGATTTGTGGTGGAAACATACACAGGGCTTATCAAAACTGCTATGCTCTTCCATAATATGAGGAGATCCTACTTCAAGTTTCAAGTTATCGCAACTGATGACTATGGGAAGGGACTGACTGGAAAAGCAGATGTACTTGTCTCTGTGGTCAATCAACTGGATATGCAAGTCATTGTTTCTAATGTGCCACCAACTTTAGTGGAAAAAAAGATAGAAGATCTCACAGAGATTTTGGATCGCTATGTTCAGGAGCAAATTCCTGGTGCCAAAGTTGTGGTGGAGTCCATTGGTGCTCGCAGGCACGGTGATGCTTTCTCTCTAGAAGACTACACCAAATGTGACCTGACTGTCTATGCAATCGATCCCCAAACCAACAGAGCTATTGACAGAAATGAGCTTTTTAAATTTTTGGACGGCAAGCTGCTCGATATCAACAAAGACTTTCAGCCATATTACGGGGAAGGAGGACGCATACTGGAGATCCGGACCCCAGAGGCAGTGACCAGCATTAAAAAGAGAGGAGAAAGTTTGGGATATACAGAAGGGGCTTTGTTGGCTCTGGCCTTCATCATCATCCTCTGCTGTATTCCTGCCATCTTGGTAGTCTTAGTCAGCTACCGACAATTTAAAGTACGCCAAGCTGAGTGCACCAAGACAGCACGAATTCAATCCGCTTTACCTGCGGCGAAACCTGCAGCCCCGACCCCAGCACCCACGGCAGGGCCCCTGCCCCTGCCGCCGCCTCCTGGTGCGCATCTCTATGAGGAACTGGGTGACAGCACGATGCATAAGTATGAGATGCCTCAATATGGAAGTCGCCGCCGACTGTTACCACCAGCTGGACAGGAGGAATATGGTGAGGTGGTTGGTGAAGCTGAGGAGGAATATGAGGAGGAAGAGGAAAAGCCAAAGATAATTAAACCAAAAGTTGAAATTAGAGAGCCTAGTGAGGAGGAAGAAGTAGTTGCAACTATTGAGAAACCACCAGCAGCTGAACCTACATATACACCCTGGAAGAAAGCTAGGATATTCCCAATGATCTTTAAGAAAGTTAGAGGATTAGCTGATAGAAAAGGCATCATTGACCTTGAGGGCGAAGAGTGGCAAAGGCGCCTTGAAGAAGAAGATAAAGATTATTTGAAATTAACTCTAGACCAAGAGGAAGCCACAGAAAGCACTGTAGAATCTGAGGAAGAATCATCAAGTGACTATACTGAGTACAGTGAAGAAGAATCTGAGTTCAGTGAGTCTGAAACCACAGAGGAAGAATCTGAATCAGAGACTTCCTCTGAGGAGGAGGAGAGTTCCACCCCTGAATCGGAAGAATCTGAATCCACAGAGTCAGAAGAAGAAAAAGCCAGGAAAAACATTGTGCTAGCAAGAAGGCGGCCTGTGATTGAGGAGGTCCAGGAAATCAAAGGCAGAAAAGAGAAGCATCCTAAAGAGCCAGAAGAAAAGCCTATAGTGGAAGAAGCAGCAGAACACAGAGAAGAAGGCGAGGAGAGTGAGCTGGCCCCTACAGAAGAATCTACAGACCTTGAAGCTCAAGATGTCCCTAAGGAGGGCAGTGCAGAATCAACTTCGGTGGAAGGAGGCATAGAAAGTGAAGAGGAATCAGAAGTAGGCAGTAGTAGCAGCAGTAGTGAAAGTCAGGCTGGAGGCCCGTGGGGCTTTCAGGTGCCAGACTACGACAGAGGCAACAAGTCTCCAGGAGTGAACTCTGAAGGTTATAACACTGCACTTTGA

Related Sequences

XP_004858368.1 Protein

Pcdh15 PREDICTED: protocadherin-15-like [Heterocephalus glaber]

Length: 1786 aa      
>XP_004858368.1
MFQQFYLCKFLVSWIIIGSLFAVCLGQYDDDWQYEDCKLARGGPPATIVAIDEESRNGTILVDNMLIKGTAGGRDPTIELSLKDNVDYWVLLDPVKQMLFLNSTGRVLDRDPPMNIHSIVVQVQCINKKVGTVIYHEVRIVVRDRNDNSPTFKHESYYATVNELTPVGTTIFTGFSGDNGATDIDDGPNGQIEYVIQYNPEDPTSNDTFEIPLMLTGNVVLRKRLNYEDKTRYFVIIQANDRAQNLNERRATTTTLTVDILDGDDLGPMFLPCFLVPSTRDCRPLTYQAAIPELRTPEELNPIIVTPPIQAIDQDRNIQPSSDRPGIVYSILVGTPEDYPQFFHMHPRTAELSLLEPVNRDFHQKFDLVIKAEQDNGHPLPAFASLHIEILDENNQSPYFTMSSYQGYVLESAPVGATISDNLDLSSPLRIVALDKDIEDVPSGGVPTKDPELHLFLNDYTSVFTVTQMGIIRYLTLLQPVDREEQQFYTFSITAFDGVQESEPVVVNIRVLDANDNTPTFPEISYDIYVYTDMRPGDSIIQLTAVDADEGSNGEITYEILVGAQGDFIINKTTGLITVAPGVELIVGQTYALTVQATDNAPPAERRHSICTVYIEVLPPNNQSPPRFPQLMYSLEISEAMRIGAVLLNLQATDREGDPITYAIKNGDPQRVFNLSETTGILTLGKALDRESTDRYILIVTASDGRPDGTSTATVNVVVTDVNDNAPVFDPYLPRNLSVVEEEANAFVGQVRATDPDAGINGQVHYSLGNFNNLFRITSNGSIYTAVKLNREVRDYYELTVVATDGAVHPRHSTLTLAIKVLDIDDNSPVFTNSTYTVVVEENLPTGTTFLQIEAKDVDLGANVSYRIRSPEVKHIFALHPFTGELSLLRRLDYEAFPDQEASITFLVEAFDIYGTMPPGIATVTVIVKDMNDYPPVFSKRIYKGLVAPDAVKGTPITTVYAEDADPPGLPASRVRYRVDDVQFPYPASIFDVEEDSGRVITRVNLNEEPTTIFKLVVVAFDDGEPVMSSSTTVKILVLHPGEIPRFTQEEYRPPPVSELATRGTMVGIISAAAINQSIVYSIVSGNEEDKFGINNITGVIYVNAPLDYETRTSYLLRVQADSLEVVLANLRVPSKSNTAKVYIEIQDENDHPPMFQKKFYIGGVSEDARMFASVLRVKATDKDTGNYSAIAYRLIIPPIKEGKEGFVVETYTGLIKTAMLFHNMRRSYFKFQVIATDDYGKGLTGKADVLVSVVNQLDMQVIVSNVPPTLVEKKIEDLTEILDRYVQEQIPGAKVVVESIGARRHGDAFSLEDYTKCDLTVYAIDPQTNRAIDRNELFKFLDGKLLDINKDFQPYYGEGGRILEIRTPEAVTSIKKRGESLGYTEGALLALAFIIILCCIPAILVVLVSYRQFKVRQAECTKTARIQSALPAAKPAAPTPAPTAGPLPLPPPPGAHLYEELGDSTMHKYEMPQYGSRRRLLPPAGQEEYGEVVGEAEEEYEEEEEKPKIIKPKVEIREPSEEEEVVATIEKPPAAEPTYTPWKKARIFPMIFKKVRGLADRKGIIDLEGEEWQRRLEEEDKDYLKLTLDQEEATESTVESEEESSSDYTEYSEEESEFSESETTEEESESETSSEEEESSTPESEESESTESEEEKARKNIVLARRRPVIEEVQEIKGRKEKHPKEPEEKPIVEEAAEHREEGEESELAPTEESTDLEAQDVPKEGSAESTSVEGGIESEEESEVGSSSSSSESQAGGPWGFQVPDYDRGNKSPGVNSEGYNTAL