Details from NCBI annotation

Gene Symbol Pcif1
Gene Name PDX1 C-terminal inhibiting factor 1, transcript variant X4
Entrez Gene ID 101717594

Database interlinks

Part of NW_004624790.1 (Scaffold)

For more information consult the page for NW_004624790.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

PCIF1 ENSCPOG00000000137 (Guinea pig)

Gene Details

PDX1 C-terminal inhibiting factor 1

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000000121, Guinea pig)

Protein Percentage 95.73%
CDS Percentage 94.07%
Ka/Ks Ratio 0.11184 (Ka = 0.0219, Ks = 0.1962)

PCIF1 ENSG00000100982 (Human)

Gene Details

PDX1 C-terminal inhibiting factor 1

External Links

Gene Match (Ensembl Protein ID: ENSP00000361486, Human)

Protein Percentage 96.3%
CDS Percentage 91.89%
Ka/Ks Ratio 0.05235 (Ka = 0.0193, Ks = 0.3693)

Pcif1 ENSMUSG00000039849 (Mouse)

Gene Details

PDX1 C-terminal inhibiting factor 1

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000039555, Mouse)

Protein Percentage 94.87%
CDS Percentage 89.08%
Ka/Ks Ratio 0.04666 (Ka = 0.0259, Ks = 0.5554)

Pcif1 ENSRNOG00000016870 (Rat)

Gene Details

PDX1 C-terminal inhibiting factor 1 (Pcif1), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000023202, Rat)

Protein Percentage 95.16%
CDS Percentage 89.51%
Ka/Ks Ratio 0.04581 (Ka = 0.024, Ks = 0.5241)

Genome Location

Sequence Coding sequence

Length: 2211 bp    Location: 8660780..8647317   Strand: -
>XM_004858124.1
ATGGCCAATGAGAATCACAGCAGTCCTCGGGAGGAAGCATCCTTGCTGAGTCACTCTCCCGGCACCTCCAGTCAGAGCCAGCCCTGCTCTCCAAAGCCAGTCCGCCTGGTACAGGACCTCCCAGAGGAGCTTGTACACGCTGGCTGGGAGAAGTGCTGGAGCCGGAGGGAGAATCGTCCCTACTACTTCAACCGATTCACCAACCAGTCCCTGTGGGAGATGCCTGTGCTGGGCCAGCACGATGTGATTTCGGACCCTTTGGGGCTGAATGCGACCCCACTGCCCCAAGACTCAAGCTTGGTGGAAACCCCCCCAGCTGAGAACAAGGTCAGAAAGAGGCAGCTCTCGGAAGAGCAGCCGAGCGGCAATGGTGTGAAGAAGCCCAAGATTGAAATCCCTGTGACACCCACAGGCCAGTCAGTGCCTAGTTCCCCCAGCATACCAGGAACACCAACCCTGAAGATTTGGGGTGCATCCCCTGAAGATAAACAGCAGGCAGTTCTCCTCCGACCGACTGAGGTGTACTGGGACTTGGACATCCAGACCAATGCTGTCATCAAGCACCGGGGGCCCTCAGAGGTACTGCCCCCACATCCAGAAGTGGAGCTGCTCCGCTCCCAGCTCATCCTGAAGCTTCGGCAGCACTACCGGGAGCTGTGCCAGCAGCGAGAAGGCATTGAGCCTCCCCGGGAATCTTTCAACCGCTGGATGCTAGAGCGCAAGGTGGTGGACAAAGGGTCTGACCCCTTGTTGCCTAGCAACTGCGAACCAGTCGTGTCACCTTCCATGTTTCGTGAAATCATGAATGACATTCCCATCAGGTTATCCCGAATCAAGTTCCGGGAGGAAGCCAAGCGCCTACTTTTTAAATATGCAGAGGCTGCCAGACGGCTCATCGAGTCCAGGAGTGCTTCTCCTGACAGTAGGAAGGTGGTCAAGTGGAACGTGGAAGATACCTTCAGCTGGCTTCGGAAGGACCACTCAGCCTCCAAGGAGGACTACATGGACCGCCTGGAGCACCTGAGGAGGCAGTGTGGCCCCCATGTGTCAGCTGCAGCCAAGGATTCTGTAGAAGGTATCTGCAGTAAGATCTACCACATCTCCCTGGAGTACGTCAAACGGATCCGAGAGAAGCACCTGGCCATCCTCAAGGAAAACAACATTTCAGAGGAGGTGGAAGCCCATGAGGTGGACCCTCGTCTGGTGTACTGCTATCCATTGCGGCTGGCTGTGCCTGCACCCCCCATGCCCAGTGTGGAAATGCACATGGAGAATAGCATGATCTGCATCCGGTACAAGGGAGAAATGGTCAAGGTCAGCCGCAGCTACTTCAGCAAGCTGTGGCTCCTTTACCGCTACAGCTGCATTGACGACTCGGTCTTTGAGAGGTTCCTGCCCCGTGTCTGGTGCCTTCTCCGACGGTACCAGATGATGTTTGGTGTGGGCCTCTATGAGGGGACTGGCCTTCAGGGGTCGCTGCCTGTGCACGTCTTTGAGGCCCTCCATCGACTCTTTGGCGTCAGCTTCGAGTGCTTTGCCTCACCTCTCAACTGCTACTTCCGCCAGTACTGTTCTGCCTTCCCTGACACAGATGGCTACTTCGGCTCCCGTGGGCCCTGCCTGGACTTTGCCCCACTGAGTGGTTCTTTTGAGGCCAACCCTCCATTCTGCGAGGAGCTCATGGACGCTATGGTCTCTCACTTTGAGGTGGGTCTGGGTTTCTCACTTGGATGGGGGAGGGGCAGAGAGAATTGCCAACCAGCTGGAGGGCAGCCCCAGATGTCCATCCTGTGCTTCCTTCCCCAGAAACTGCTGGAGAGCTCATTGGAGCCCCTGTCCTTCATCGTGTTCATTCCCGAGTGGCGGGAACCCCCCACACCAGCGCTCACCCGCATGGAGCAGAGCCGCTTCAAACGCCACCAGCTAGTCCTGCCCGCCTTTGAGCATGAGTACCGCAGTGGTTCCCAGCATGTCTGCAAGAAGGAGGAAATGCACTACAAGGCTGTCCACAACACGGCCGTGCTCTTCCTACAAAATGACCCTGGCTTTGCCAAGTGGGGGCCGACGCCTGAGCGGCTGCAGGAGCTAAACACCGCTTACCGGCAGTCAGGCCGCAGCCATGGCTCCAGCTCTTCCTCATCCTCTTCAGAGGCCAAGGACCAGGACTCTAGCCGAGAGCAGGGCCCTAGCCGCGAGCCTCACCCAACTTAA

Related Sequences

XP_004858181.1 Protein

Pcif1 PREDICTED: phosphorylated CTD-interacting factor 1 isoform X4 [Heterocephalus glaber]

Length: 736 aa      View alignments
>XP_004858181.1
MANENHSSPREEASLLSHSPGTSSQSQPCSPKPVRLVQDLPEELVHAGWEKCWSRRENRPYYFNRFTNQSLWEMPVLGQHDVISDPLGLNATPLPQDSSLVETPPAENKVRKRQLSEEQPSGNGVKKPKIEIPVTPTGQSVPSSPSIPGTPTLKIWGASPEDKQQAVLLRPTEVYWDLDIQTNAVIKHRGPSEVLPPHPEVELLRSQLILKLRQHYRELCQQREGIEPPRESFNRWMLERKVVDKGSDPLLPSNCEPVVSPSMFREIMNDIPIRLSRIKFREEAKRLLFKYAEAARRLIESRSASPDSRKVVKWNVEDTFSWLRKDHSASKEDYMDRLEHLRRQCGPHVSAAAKDSVEGICSKIYHISLEYVKRIREKHLAILKENNISEEVEAHEVDPRLVYCYPLRLAVPAPPMPSVEMHMENSMICIRYKGEMVKVSRSYFSKLWLLYRYSCIDDSVFERFLPRVWCLLRRYQMMFGVGLYEGTGLQGSLPVHVFEALHRLFGVSFECFASPLNCYFRQYCSAFPDTDGYFGSRGPCLDFAPLSGSFEANPPFCEELMDAMVSHFEVGLGFSLGWGRGRENCQPAGGQPQMSILCFLPQKLLESSLEPLSFIVFIPEWREPPTPALTRMEQSRFKRHQLVLPAFEHEYRSGSQHVCKKEEMHYKAVHNTAVLFLQNDPGFAKWGPTPERLQELNTAYRQSGRSHGSSSSSSSSEAKDQDSSREQGPSREPHPT