Sequence details NCBI ID: XM_004858114.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Cd40
Gene Name CD40 molecule, TNF receptor superfamily member 5, transcript variant X1
Entrez Gene ID 101715501

Database interlinks

Part of NW_004624790.1 (Scaffold)

For more information consult the page for NW_004624790.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

CD40 ENSCPOG00000023827 (Guinea pig)

Gene Details

CD40 molecule, TNF receptor superfamily member 5

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000018084, Guinea pig)

Protein Percentage 80.14%
CDS Percentage 86.76%
Ka/Ks Ratio 0.49301 (Ka = 0.1189, Ks = 0.2411)

CD40 ENSG00000101017 (Human)

Gene Details

CD40 molecule, TNF receptor superfamily member 5

External Links

Gene Match (Ensembl Protein ID: ENSP00000361359, Human)

Protein Percentage 70.4%
CDS Percentage 77.98%
Ka/Ks Ratio 0.42791 (Ka = 0.2086, Ks = 0.4875)

Cd40 ENSMUSG00000017652 (Mouse)

Gene Details

CD40 antigen

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000017799, Mouse)

Protein Percentage 58.63%
CDS Percentage 68.59%
Ka/Ks Ratio 0.34362 (Ka = 0.3114, Ks = 0.9063)

Cd40 ENSRNOG00000018488 (Rat)

Gene Details

CD40 molecule, TNF receptor superfamily member 5 (Cd40), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000052022, Rat)

Protein Percentage 59.93%
CDS Percentage 71.48%
Ka/Ks Ratio 0.35278 (Ka = 0.2743, Ks = 0.7775)

Genome Location

Sequence Coding sequence

Length: 855 bp    Location: 8485909..8475601   Strand: -
Raw sequence   
>XM_004858114.1
ATGGTTCGCGTGCCTCTGCAGTGCGTCCTCTGGGGCTACTTGCTGACGGCCGTCTACCCAGAAGCATCTCTTGAATGTAGAGAAAATCAATTCCTACTGAACAATGTGTGCTGTGATTTGTGCCCACCAGGAGAGAAGCTGGTGGATGAATGCACAGAGTTCAAGACCACACAATGCCTTCGCTGCACAAAAGGCGAATTCTTAGGCGCCTGGAACAGAGAGAGACACTGTCATGTGCACAGATACTGCGACCCCAATCTAGGGCTTCAGGTCCAGAAGGAGGGCACCTTAGAAACAGACACCACTTGCTTCTGTAAGGAAGGCCAACACTGCACTAGCGATGCCTGTGAGCACTGTGATCTCCACACCTCCTGTGGCCCTGGATTTGGGGTCAGGCATATAGGTACAGGGACTTCTGATACCATCTGTGAACCCTGCCCGGATGGCTTCTTCTCCAATGTGTCATCTGCTTTTGAAAAGTGTCACCCTTGGACAAGCTGTGAGAACAAACAGCTGGTGGAGCTACAAGCAGGAACTAACGTGACTGACGCTGTCTGCGGTTTCCAGAATCGGAGTCGAGCCCTTCTGGTGATCCCTGTCATCATAGGCATCCTGATTGTCATCTTGTTGATGTCTGTGTACTTCACTGAGTTCCCAGGAAGGGTGTTCAGGAAGCCAAAGAATCAGGCCATCCATGATAAGCCTGAGTGGCAAGGTCCTGTGGAAGTACCAGATGCAGACGATTGTCTTGGCCACAACACTGCTGCTCCAGTGCAGGAGACTTTGCATGGGTGCCAGCCCGTTACCCAGGAGGATGGCAAGGAGAGCCGCATCTCAGTGCAAGAGAGACAGTGA

Related Sequences

XP_004858171.1 Protein

Cd40 PREDICTED: tumor necrosis factor receptor superfamily member 5 isoform X1 [Heterocephalus glaber]

Length: 284 aa      View alignments
>XP_004858171.1
MVRVPLQCVLWGYLLTAVYPEASLECRENQFLLNNVCCDLCPPGEKLVDECTEFKTTQCLRCTKGEFLGAWNRERHCHVHRYCDPNLGLQVQKEGTLETDTTCFCKEGQHCTSDACEHCDLHTSCGPGFGVRHIGTGTSDTICEPCPDGFFSNVSSAFEKCHPWTSCENKQLVELQAGTNVTDAVCGFQNRSRALLVIPVIIGILIVILLMSVYFTEFPGRVFRKPKNQAIHDKPEWQGPVEVPDADDCLGHNTAAPVQETLHGCQPVTQEDGKESRISVQERQ