Sequence details NCBI ID: XM_004858052.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Pard6b
Gene Name par-6 partitioning defective 6 homolog beta (C. elegans), transcript variant X2
Entrez Gene ID 101724837

Database interlinks

Part of NW_004624790.1 (Scaffold)

For more information consult the page for NW_004624790.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

PARD6B ENSCPOG00000021603 (Guinea pig)

Gene Details

par-6 family cell polarity regulator beta

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000020826, Guinea pig)

Protein Percentage 98.29%
CDS Percentage 92.86%
Ka/Ks Ratio 0.02849 (Ka = 0.0081, Ks = 0.2859)

PARD6B ENSG00000124171 (Human)

Gene Details

par-6 family cell polarity regulator beta

External Links

Gene Match (Ensembl Protein ID: ENSP00000360672, Human)

Protein Percentage 95.48%
CDS Percentage 89.64%
Ka/Ks Ratio 0.0593 (Ka = 0.0251, Ks = 0.4232)

Pard6b ENSMUSG00000044641 (Mouse)

Gene Details

par-6 (partitioning defective 6) homolog beta (C. elegans)

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000052619, Mouse)

Protein Percentage 90.93%
CDS Percentage 79.41%
Ka/Ks Ratio 0.03076 (Ka = 0.0562, Ks = 1.8272)

Pard6b ENSRNOG00000010883 (Rat)

Gene Details

par-6 (partitioning defective 6) homolog beta (C. elegans) (Pard6b), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000014568, Rat)

Protein Percentage 90.11%
CDS Percentage 78.34%
Ka/Ks Ratio 0.0318 (Ka = 0.0638, Ks = 2.0046)

Genome Location

Sequence Coding sequence

Length: 1065 bp    Location: 4959887..4940178   Strand: -
Raw sequence   
>XM_004858052.1
ATGGGACAAAAGTTTGGAGCTGAGTTTCGGCGATTTTCACTGGAAAGATCAAAACCTGGAAAATTTGAGGAGTTTTATGGATTACTGCAGCATGTTCATAAGATCCCCAATGTTGATGTGCTGGTGGGCTATGCAGACATCCACGGAGACTTACTGCCTATAAATAACGACGATAATTACCACAAGGCGGTTTCAACAGCCAATCCGCTGCTTAGGATTTTTATACAGAAGAAAGAAGAAGCAGACTACAGTGCCTTTGGTACAGACACGCTAATAAAGAAGAAGAATGTTTTAACCAATGTATTACGTCCTGACAACCATAGAAAAAAGCCACACATCGTCATTAGTATGCCACAAGACTTCAGACCTGTGTCTTCCATCATAGACGTGGATATTCTCCCTGAAACGCACCGTAGAGTCCGTCTTTATAAGTATGGTACTGAGAAACCCCTAGGGTTCTATATCCGGGACGGCTCCAGTGTCAGGGTAACGCCCCACGGCTTAGAGAAGGTCCCGGGGATTTTCATATCCAGACTCGTCCCAGGAGGTCTGGCGCAGAGCACAGGACTATTAGCTGTTAATGATGAAGTCTTAGAAGTTAATGGCATAGAAGTTTCAGGGAAGAGTCTTGACCAAGTGACAGACATGATGATTGCGAACAGCCGCAACCTCATCATCACAGTGAGACCAGCAAACCAGAGGAATAACGTCGTTAGGAACAGTCGGACTTCCGGCAGCTCTGGCCAGTCTACTGATAACAGCCTTCTTAGCTACTCGCAGCAGGTCGAACCCAGCTTTGAGCCAGAGGATGAAGACAGTGAAGAAGATGACATTATTATTGAAGACAACGGAGTGCCACAGCAGATTCCGAAAGCTGTTCCTGATGCTGAGAGCCTGGAATCCTTAACACAAATAGAACTCAGTTTTGAGTCTGAACAGAATGGTTTTATTCCTTCCAATGACGTGAGCTTAGCACCCATAGCAAGTGGCACAAACACAGAATTTGAAGCACGTGCTGCAGATCAAAAACTCTTAGAAGAAGATGGGACAATCATAACATTATGA

Related Sequences

XP_004858109.1 Protein

Pard6b PREDICTED: partitioning defective 6 homolog beta isoform X2 [Heterocephalus glaber]

Length: 354 aa      View alignments
>XP_004858109.1
MGQKFGAEFRRFSLERSKPGKFEEFYGLLQHVHKIPNVDVLVGYADIHGDLLPINNDDNYHKAVSTANPLLRIFIQKKEEADYSAFGTDTLIKKKNVLTNVLRPDNHRKKPHIVISMPQDFRPVSSIIDVDILPETHRRVRLYKYGTEKPLGFYIRDGSSVRVTPHGLEKVPGIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQVTDMMIANSRNLIITVRPANQRNNVVRNSRTSGSSGQSTDNSLLSYSQQVEPSFEPEDEDSEEDDIIIEDNGVPQQIPKAVPDAESLESLTQIELSFESEQNGFIPSNDVSLAPIASGTNTEFEARAADQKLLEEDGTIITL