Sequence details NCBI ID: XM_004857967.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Col8a1
Gene Name collagen, type VIII, alpha 1, transcript variant X5
Entrez Gene ID 101711094

Database interlinks

Part of NW_004624789.1 (Scaffold)

For more information consult the page for NW_004624789.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

COL8A1 ENSCPOG00000008985 (Guinea pig)

Gene Details

collagen, type VIII, alpha 1

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000019981, Guinea pig)

Protein Percentage 97.1%
CDS Percentage 93.62%
Ka/Ks Ratio 0.08794 (Ka = 0.016, Ks = 0.1816)

COL8A1 ENSG00000144810 (Human)

Gene Details

collagen, type VIII, alpha 1

External Links

Gene Match (Ensembl Protein ID: ENSP00000261037, Human)

Protein Percentage 95.16%
CDS Percentage 90.86%
Ka/Ks Ratio 0.10575 (Ka = 0.0281, Ks = 0.2659)

Col8a1 ENSMUSG00000068196 (Mouse)

Gene Details

collagen, type VIII, alpha 1

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000086745, Mouse)

Protein Percentage 94.76%
CDS Percentage 87.41%
Ka/Ks Ratio 0.06683 (Ka = 0.0303, Ks = 0.4538)

Col8a1 ENSRNOG00000039668 (Rat)

Gene Details

collagen, type VIII, alpha 1 (Col8a1), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000057564, Rat)

Protein Percentage 94.89%
CDS Percentage 87.39%
Ka/Ks Ratio 0.06707 (Ka = 0.0305, Ks = 0.4549)

Genome Location

Sequence Coding sequence

Length: 2238 bp    Location: 12997407..13128035   Strand: +
Raw sequence   
>XM_004857967.1
ATGGCTGTACTACCTGGTCCTCTGCAGCTGCTTGGAGTGCTGGTCACCATTTCCCTGAGCTCCATCAGGTTCATTCAGGCTGGTGCCTACTATGGGATCAAGCCGCTGCCACCTCAGATTCCTCCTCAGATGCCACCACAAATTCCCCAATACCAGCCCCTGGGCCAGCAAGTACCTCATATGCCTCTGGGCAAAGATGGCCTTACCATGGGCAAAGAGCTGCCTCACTTGCAGTATGGCAAAGAGTATCCACACTTACCCCAATATATGAAGGAGATTCAACCAGTGCCAAGGATGGGCAAGGAAACAGTACCCAAGAAAGGCAAAGTAGAAATACCGTTAGCCAGTTTACGAGGAGAACAAGGTCCCCGTGGAGAACCTGGCCCAAGAGGACCTCCTGGACCTCCTGGTTTGCCAGGTCATGGGATTCCTGGAATCAAAGGAAAACCAGGGCCACAAGGCTATCCAGGAGTTGGAAAGCCAGGTATGCCTGGAATGCCAGGGAAGCCAGGAGCCATGGGAATGCCTGGGGCAAAAGGTGAAATTGGACCCAAAGGGGAAATTGGGCCTATGGGGATTCCAGGCCCACAAGGACCTCCAGGGCCTCATGGACTTCCTGGCATTGGGAAGCCAGGTGGACCGGGATTACCAGGACAGCCTGGACCAAAGGGTGATCGAGGACCCAAAGGACCACCAGGACCTCCAGGCCTCCAGGGTCCTAAAGGAGAGAAGGGCTTTGGGATGCCAGGTTTGCCAGGTCTGAAGGGCCCTCCAGGAATGCATGGCCCTCCTGGCCCGGTTGGACTCCCAGGAGTGGGAAAACCAGGAGTCACAGGCTTCCCTGGGCCCCAGGGCCCCCTGGGGAAGCCAGGGCCGCCAGGGGAACCTGGCCCACAAGGACCTATCGGGGTAACAGGTGCTCAAGGACCCCCTGGGATGCCTGGACTTGGAAAACCAGGCCAGGATGGGATCCCTGGCCAGCCAGGATTTCCAGGTGGCAAAGGGGAGCAAGGACTACCAGGGGTGCCAGGACCCCCAGGCCTTCCAGGAGTTGGGAAACCAGGTTTCCCAGGGCCCAAAGGTGATAGGGGTGTTGGGGGTATTCCTGGGGCACTTGGACCCAGAGGGGAGAAAGGGCTAGTAGGTGCCCCTGGAATGGGGGGTCCCCCAGGAGAGCCAGGCTTACCTGGAATCCCTGGTCCTATGGGCCCTCCTGGTGCTATTGGTTTCCCTGGACCCAAAGGAGAGGGTGGAGTTGTAGGGCCCCAAGGTCCACCAGGTCCCAAGGGTGAGCCAGGGCTTCAGGGCTTTCCAGGAAAGCCAGGTTTCCTTGGAGAAGTAGGGGCCCCTGGTATGAGAGGTTTGCCAGGTCCCATAGGGCCTAAGGGGGAAATTGGCCACAAAGGATTGCCAGGGCTTCCTGGTGTGCCAGGGCTACTTGGACCCAAGGGAGAACCAGGCATCCCAGGGGATCAGGGTCTCCAGGGACCTCCAGGTATCCCAGGAATTGTAGGCCCTAGCGGCCCCATTGGGCCACCTGGAATTCCAGGTCCCAAAGGGGAACCAGGCCTCCCAGGGCCCCCTGGGTTCCCTGGTGTAGGGAAACCTGGAGTCGCAGGACTTCATGGGCCCCCAGGGAAGCCTGGTGCCCTTGGTCCTCAAGGCCAACCTGGACTTCCAGGGCCCCCAGGACCTCCAGGACCACCTGGTCCTCCGGCTGTGATGCCCCCAACACCCCCCCCGCAGGGAGAGTATCTGCCAGATATGGGGCTAGGAATTGATGGTGTGAAACCCCCCCATGCCTATGGGGCTAAAAAAGGCAAGAATGGAGGGCCAGCCTACGAGATGCCTGCATTTACCGCGGAGCTGACTGCACCCTTCCCGCCAGTGGGGTTGCCAGTGAAGTTTGACAAGCTGCTATATAATGGCAGACAGAACTACAATCCACAGACCGGCATCTTCACCTGTGAGGTCCCTGGCGTCTACTACTTTGCTTACCATGTTCACTGCAAGGGCGGCAACGTGTGGGTTGCTCTCTTCAAGAACAACGAGCCCATGATGTACACATACGATGAGTACAAAAAGGGCTTTCTGGACCAGGCATCTGGGAGTGCCGTGCTGCTGCTCAGGCCTGGAGACAGGGTGTTCCTCCAGATGCCCTCAGAACAGGCTGCTGGACTGTATGCAGGGCAGTATGTCCATTCCTCCTTTTCAGGATATTTATTGTATCCCATGTAA

Related Sequences

XP_004858024.1 Protein

Col8a1 PREDICTED: uncharacterized protein C3orf26 homolog isoform X5 [Heterocephalus glaber]

Length: 745 aa      View alignments
>XP_004858024.1
MAVLPGPLQLLGVLVTISLSSIRFIQAGAYYGIKPLPPQIPPQMPPQIPQYQPLGQQVPHMPLGKDGLTMGKELPHLQYGKEYPHLPQYMKEIQPVPRMGKETVPKKGKVEIPLASLRGEQGPRGEPGPRGPPGPPGLPGHGIPGIKGKPGPQGYPGVGKPGMPGMPGKPGAMGMPGAKGEIGPKGEIGPMGIPGPQGPPGPHGLPGIGKPGGPGLPGQPGPKGDRGPKGPPGPPGLQGPKGEKGFGMPGLPGLKGPPGMHGPPGPVGLPGVGKPGVTGFPGPQGPLGKPGPPGEPGPQGPIGVTGAQGPPGMPGLGKPGQDGIPGQPGFPGGKGEQGLPGVPGPPGLPGVGKPGFPGPKGDRGVGGIPGALGPRGEKGLVGAPGMGGPPGEPGLPGIPGPMGPPGAIGFPGPKGEGGVVGPQGPPGPKGEPGLQGFPGKPGFLGEVGAPGMRGLPGPIGPKGEIGHKGLPGLPGVPGLLGPKGEPGIPGDQGLQGPPGIPGIVGPSGPIGPPGIPGPKGEPGLPGPPGFPGVGKPGVAGLHGPPGKPGALGPQGQPGLPGPPGPPGPPGPPAVMPPTPPPQGEYLPDMGLGIDGVKPPHAYGAKKGKNGGPAYEMPAFTAELTAPFPPVGLPVKFDKLLYNGRQNYNPQTGIFTCEVPGVYYFAYHVHCKGGNVWVALFKNNEPMMYTYDEYKKGFLDQASGSAVLLLRPGDRVFLQMPSEQAAGLYAGQYVHSSFSGYLLYPM