Sequence details NCBI ID: XM_004857908.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Pou1f1
Gene Name POU class 1 homeobox 1, transcript variant X2
Entrez Gene ID 101717367

This gene is present in the GenAge database and has been identified as potentially important to ageing in humans.

Database interlinks

Part of NW_004624789.1 (Scaffold)

For more information consult the page for NW_004624789.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

POU1F1 ENSCPOG00000006596 (Guinea pig)

Gene Details

POU class 1 homeobox 1

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000005941, Guinea pig)

Protein Percentage 96.56%
CDS Percentage 93.36%
Ka/Ks Ratio 0.0723 (Ka = 0.0176, Ks = 0.2428)

POU1F1 ENSG00000064835 (Human)

Gene Details

POU class 1 homeobox 1

External Links

Gene Match (Ensembl Protein ID: ENSP00000342931, Human)

Protein Percentage 96.91%
CDS Percentage 92.67%
Ka/Ks Ratio 0.04412 (Ka = 0.0139, Ks = 0.3149)

Pou1f1 ENSMUSG00000004842 (Mouse)

Gene Details

POU domain, class 1, transcription factor 1

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000135113, Mouse)

Protein Percentage 95.19%
CDS Percentage 86.94%
Ka/Ks Ratio 0.0346 (Ka = 0.0225, Ks = 0.6492)

POU1F1 ENSRNOG00000000715 (Rat)

Gene Details

Pituitary-specific positive transcription factor 1

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000000905, Rat)

Protein Percentage 95.19%
CDS Percentage 88.77%
Ka/Ks Ratio 0.04314 (Ka = 0.0222, Ks = 0.5149)

Genome Location

Sequence Coding sequence

Length: 876 bp    Location: 3605537..3592220   Strand: -
Raw sequence   
>XM_004857908.1
ATGAGTTGCCAATCTTTTACTTCGGCTGATACCTTTATACCTCTGAATTCTGAGGCTTCTGCAACTTTGCCTCTGATAATGCATCACAGCGCTGCCGAGTGTCTACCAGTGTCCAACCACGCCAGCAACGTGATGTCTACAGCAACGGGGCTACATTATTCTGTTCCTTCTTGCCATTATGGAAACCAGCCATCAACCTATGGAGTGATGGCAGGCAGTTTAACCCCGTGTCTTTACAAGTTTCCAGACCACGCTCTGAGCCATGGATTTCCTCCCCTACACCAGCCTCTGCTAGCGGAAGACCCCACAGCCTCTGAATTCAAGCAGGAACTCAGGCGGAAAAGTAAATTGGTTGAAGAGCCAACAGACATGGATTCTCCGGAAATCAGAGAACTTGAAAAGTTTGCCAATGAATTTAAAGTGAGAAGAATCAAGTTAGGATACACTCAAACAAATGTTGGTGAAGCCCTGGCAGCTGTTCATGGCTCTGAATTCAGTCAAACAACAATCTGCCGATTTGAAAACCTGCAGCTCAGCTTTAAAAACGCATGCAAACTGAAAGCAATATTATCCAAGTGGCTGGAGGAAGCCGAGCAAGTAGGAGCTTTGTACAATGAAAAAGTGGGAGCAAATGAAAGGAAAAGGAAACGCAGAACAACTATAAGTATTGCAGCTAAAGATGCTCTGGAGAGAAACTTTGGAGAACAGAATAAACCTTCCTCTCAAGAGATCATGCGGATGGCTGAAGAACTGAATCTTGAAAAAGAAGTAGTAAGAGTTTGGTTTTGCAACCGAAGGCAGAGGGAAAAACGGGTGAAAACAAGTTTGAATCAAAGTCTGTTTTCTATTTCTAAAGAGCATCTTGAGTGCAGATAA

Related Sequences

XP_004857965.1 Protein

Pou1f1 PREDICTED: pituitary-specific positive transcription factor 1 isoform X2 [Heterocephalus glaber]

Length: 291 aa      View alignments
>XP_004857965.1
MSCQSFTSADTFIPLNSEASATLPLIMHHSAAECLPVSNHASNVMSTATGLHYSVPSCHYGNQPSTYGVMAGSLTPCLYKFPDHALSHGFPPLHQPLLAEDPTASEFKQELRRKSKLVEEPTDMDSPEIRELEKFANEFKVRRIKLGYTQTNVGEALAAVHGSEFSQTTICRFENLQLSFKNACKLKAILSKWLEEAEQVGALYNEKVGANERKRKRRTTISIAAKDALERNFGEQNKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKRVKTSLNQSLFSISKEHLECR