Sequence details NCBI ID: XM_004857901.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Pdcd6ip
Gene Name programmed cell death 6 interacting protein
Entrez Gene ID 101711093

Database interlinks

Part of NW_004624788.1 (Scaffold)

For more information consult the page for NW_004624788.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

PDCD6IP ENSCPOG00000003230 (Guinea pig)

Gene Details

programmed cell death 6 interacting protein

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000002926, Guinea pig)

Protein Percentage 97.6%
CDS Percentage 96.16%
Ka/Ks Ratio 0.11828 (Ka = 0.0129, Ks = 0.1095)

PDCD6IP ENSG00000170248 (Human)

Gene Details

programmed cell death 6 interacting protein

External Links

Gene Match (Ensembl Protein ID: ENSP00000411825, Human)

Protein Percentage 96.28%
CDS Percentage 93.68%
Ka/Ks Ratio 0.09305 (Ka = 0.0192, Ks = 0.206)

Pdcd6ip ENSMUSG00000032504 (Mouse)

Gene Details

programmed cell death 6 interacting protein

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000107492, Mouse)

Protein Percentage 93.76%
CDS Percentage 89.16%
Ka/Ks Ratio 0.08276 (Ka = 0.0334, Ks = 0.4041)

Pdcd6ip ENSRNOG00000008981 (Rat)

Gene Details

programmed cell death 6 interacting protein (Pdcd6ip), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000012114, Rat)

Protein Percentage 93.51%
CDS Percentage 88.3%
Ka/Ks Ratio 0.07972 (Ka = 0.0356, Ks = 0.4469)

Genome Location

Sequence Coding sequence

Length: 2502 bp    Location: 11771533..11849040   Strand: +
Raw sequence   
>XM_004857901.1
ATGGCTACATTCATCTCGGTGCAGCTGAAAAAGACCTCGGAGGTGGACCTGGCTAAGCCACTGGTGAAGTTCATCCAGCAGACCTACCCGAGCGGCGGGGAGGAGCAGGCCCAGTACTGCCGCGCGGCCGAGGAGCTCAGCAAGCTGCGCCGCACCGCCCTGGGCCGCCCGCTGGACAAGCATGAGGGCGCCCTCGAGACGCTCCTGAGATATTATGATCAGATTTGTGCCATTGAACCCAAATTCCCATTTTCTGAAAATCAGATATGCTTGACATTTACCTGGAAGGATGCTTTTGATAAAGGTTCACTTTTTGGAGGATCTGTAAAATTGGCTCTTGCAAGCTTAGGATATGAAAAGAGCTGTGTGTTGTTCAATTGTGCAGCCTTAGCTAGCCAGATTGCAGCAGAACAGAACCTGGATAATGATGAAGGATTGAAAATCGCTGCTAAACATTACCAGTTTGCTAGTGGTGCCTTTTTACATATTAAGGAGACGGTTTTATCTGCCTTAAATCGAGAGCCTACTGTGGACATATCTCCAGACACTGTTGGGACCCTCAGTCTTATCATGCTGGCACAGGCCCAAGAAGTATTTTTTTTAAAAGCTGCAAGAGATAAAATGAAAGATGCCATCATAGCTAAGTTGGCTAATCAGGCTGCAGATTACTTTGGTGATGCTTTCAAACAGTGTCAATACAAAGACACTCTCCCCAAGGAGGTGTTCCCCGTCTTGGCTGCAAAACACTGTATCATGCAGGCCAATGCTGAGTACCACCAGTCTATCCTGGCAAAACAGCAGAAGAAATTTGGGGAAGAGATTGCAAGGTTACAGCATGCAGCAGAATTGATTAAGACAGTGGTATCGCGCTATGATGAATATGTCAATGTGAAGGATTTTTCTGACAAAATCAGCCGTGCCCTTACTGCAGCAAAGAAGGATAATGACTTCATTTATCATGATCGAGTTCCAGACCTTAAAGATCTAGATCCTATTGGCAAAGCCTCACTTGTGAAGTCTACCCCAGTCAATGTACCCATCAGCCAGAAGTTCAATGATCTGTTTGAGAAGATGGTTCCTGTGTCAGTGCAACAATCTTTGGCTGCCTTTAATCAGAGGAAAGCTGATTTGGTCAACAGATCAATTGCTCAAATGAGAGAAGCTACCACTTTGGCAAATGGGGTATTAGCTTCCCTTAATCTTCCAGCAGCAATTGAAGATGTGTCTGGAGATACTGTACCTCAGTCTATATTGACCAAGTCTACATCTGTGATTGAACAGGGAGGTATCCAGACTGTTGATCAGTTGATCAAAGAACTACCTGAACTACTACAAAGAAATAGAGAAATTCTAGATGAGCCCACAGAGGGAACCAACTTCAGAACAGTTTTAGATAAAGCTGTGCAAGCAGATGGACTAGTAAAAGAACGTTACCAGTCTCATCGTGACACCATTGCACTTCTCTGTAAGCCGGAGCCTGAGCTGAATGCTGCCATCCCCTCTGCTAACCCAGCAAAGACCATGCAGGGCAGCGAGGTTGTAAATGTCTTAAAATCCTTGTTGACAAATCTTGATGAAGTAAAGAAGGAAAGAGAGAATCTCGAGAATGACCTTAAGTCAGTGAATTTTGATATGACAAGCAAGTTTTTGACAGCTTTGGCTCAGGATGGTGTGATTAATGAAGAAGCTCTTTCTGTCACTGAACTGGATCGAATCTATGGAGGTCTTACAACTAAAGTCCAAGAATCTCTAAAGAAACAGGAGGGACTTCTAAAAAATATTCAGGTCTCACACCAGGAATTTTCAAAAATGAAACAATCTAACAATGAGGCTAACTTAAGAGAAGAAGTTTTGAAGAATTTAGCTACTGCATATGACAACTTTGTTGAACTTGTAGCTAATTTGAAGGAGGGCACAAAGTTCTATAATGAGCTGACTGAAATCCTGGTCAGGTTCCAGAACAAATGCAGTGATATAGTGTTTGCACGGAAGACAGAAAGAGATGAACTCTTAAAGGACTTGCAGCAAAGCATTGCCAGAGAACCTAGTGCTCCTTCAATTCCTACACCTGCATATCAGTCCTCTCCAGCAGGGGGACATGCACCGTCTCCTCCAACTCCAGCTCCAAGAACCATGCCGCCTTCTAAGCCCCAACCTCCAGCCCGGCCTCCACCTCCTGTGCTTCCAGCAAATCGAGCTCCTTCTACTAGTGCTCCAGCTCCATTGGGAACTGGGAGTGTGACACCAGCTCCTTCACAAACCCCTGGCTCAGCTCCCCTTCCACAGGCCCAGGGACCACCCTACCCTACCTATCCAGGATATCCTGGGTATTGTCAAATGCCCATGCCCATGGGCTATAATCCTTATGCCTACGGCCAGTATAATATGCCATATCCACCAGTGTATCACCAGAGCCCTGGACAAGCTCCATACCCAGGACCCCAGCAGCCTTCATACCCCTTCCCTCAGCCCCCACAGCAGTCATACTATCCACAGCAGTAA

Related Sequences

XP_004857958.1 Protein

Pdcd6ip PREDICTED: programmed cell death 6-interacting protein-like [Heterocephalus glaber]

Length: 833 aa      View alignments
>XP_004857958.1
MATFISVQLKKTSEVDLAKPLVKFIQQTYPSGGEEQAQYCRAAEELSKLRRTALGRPLDKHEGALETLLRYYDQICAIEPKFPFSENQICLTFTWKDAFDKGSLFGGSVKLALASLGYEKSCVLFNCAALASQIAAEQNLDNDEGLKIAAKHYQFASGAFLHIKETVLSALNREPTVDISPDTVGTLSLIMLAQAQEVFFLKAARDKMKDAIIAKLANQAADYFGDAFKQCQYKDTLPKEVFPVLAAKHCIMQANAEYHQSILAKQQKKFGEEIARLQHAAELIKTVVSRYDEYVNVKDFSDKISRALTAAKKDNDFIYHDRVPDLKDLDPIGKASLVKSTPVNVPISQKFNDLFEKMVPVSVQQSLAAFNQRKADLVNRSIAQMREATTLANGVLASLNLPAAIEDVSGDTVPQSILTKSTSVIEQGGIQTVDQLIKELPELLQRNREILDEPTEGTNFRTVLDKAVQADGLVKERYQSHRDTIALLCKPEPELNAAIPSANPAKTMQGSEVVNVLKSLLTNLDEVKKERENLENDLKSVNFDMTSKFLTALAQDGVINEEALSVTELDRIYGGLTTKVQESLKKQEGLLKNIQVSHQEFSKMKQSNNEANLREEVLKNLATAYDNFVELVANLKEGTKFYNELTEILVRFQNKCSDIVFARKTERDELLKDLQQSIAREPSAPSIPTPAYQSSPAGGHAPSPPTPAPRTMPPSKPQPPARPPPPVLPANRAPSTSAPAPLGTGSVTPAPSQTPGSAPLPQAQGPPYPTYPGYPGYCQMPMPMGYNPYAYGQYNMPYPPVYHQSPGQAPYPGPQQPSYPFPQPPQQSYYPQQ