Details from NCBI annotation

Gene Symbol Ubp1
Gene Name upstream binding protein 1 (LBP-1a), transcript variant X1
Entrez Gene ID 101714569

Database interlinks

Part of NW_004624788.1 (Scaffold)

For more information consult the page for NW_004624788.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

UBP1 ENSCPOG00000009270 (Guinea pig)

Gene Details

upstream binding protein 1 (LBP-1a)

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000008322, Guinea pig)

Protein Percentage 89.44%
CDS Percentage 89.26%
Ka/Ks Ratio 0.31616 (Ka = 0.08, Ks = 0.2531)

UBP1 ENSG00000153560 (Human)

Gene Details

upstream binding protein 1 (LBP-1a)

External Links

Gene Match (Ensembl Protein ID: ENSP00000283629, Human)

Protein Percentage 91.85%
CDS Percentage 90.68%
Ka/Ks Ratio 0.21561 (Ka = 0.0547, Ks = 0.2536)

Ubp1 ENSMUSG00000009741 (Mouse)

Gene Details

upstream binding protein 1

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000081946, Mouse)

Protein Percentage 91.67%
CDS Percentage 89.01%
Ka/Ks Ratio 0.14262 (Ka = 0.0522, Ks = 0.3663)

Ubp1 ENSRNOG00000009729 (Rat)

Gene Details

upstream binding protein 1 (LBP-1a) (Ubp1), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000013050, Rat)

Protein Percentage 91.3%
CDS Percentage 88.33%
Ka/Ks Ratio 0.14129 (Ka = 0.0559, Ks = 0.3954)

Genome Location

Sequence Coding sequence

Length: 1689 bp    Location: 11409389..11355222   Strand: -
>XM_004857843.1
ATGGCCTGGGTGCTCAAGATGGACGAGGTGATCGAGTCCGGGCTGGTGCACGACTTCGACGCCAGCCTTTCGGGGATCGGGCAGGAGCTGGGCGCCGGCGCCTACAGCATGAGTGATGTGTTGGCATTGCCCATTTTCAAGCAGGAAGATTCCAACCTTCCATTGGATGGTGAAACAAAAAACCCTCCCTTTCAGTATGTGATGTGTGCTGCAACATCACCAGCAGTCAAACTGCACGACGAGACACTCACTTACCTGAACCAAGGCCAGTCTTATGAAATTCGGATGTTGGATAATCGGAAAATGGGAGATATGCCAGAGATCAGTGGAAAATTGGTAAAGAGCATCATAAGGGTTGTATTCCATGACAGACGACTGCAGTACACGGAGCATCAGCAACTTGAAGGCTGGAAGTGGAATCGCCCAGGAGATAGACTGCTCGATTTAGATATTCCAATGTCTGTGGGAATAATTGATAGAAGGACAAATCCAAGCCAGTTAAACGCAGTTGAATTTCTGTGGGACCCTGCAAAACGCACATCTGCTTTCATTCAGGTGCACTGCATCAGCACAGAATTTACTCCACGGAAACACGGAGGTGAGAAGGGAGTGCCTTTTAGAATTCAGGTTGACACCTTTAAGCAGAATGAAAATGGGGAATACACTGACCATCTTCACTCGGCTAGCTGCCAGATCAAAGTTTTTAAGCCCAAAGGTGCAGACAGGAAACAAAAAACTGATCGAGAAAAGATGGAGAAGAGAACCGCTCATGAAAAAGAAAAGTATCAGCCATCATATGATACCACAATCCTCACAGAGATGAGGCTTGAGCCTATAATTGAAGATGCAGTTGAACATGAGCAGAAAAAGTCCAGCAAGCGGACTTTGCCAGCAGACTACGGTGATTCTCTGGCAAAGCGAGGCAGTTGTTCTCCATGGCCTGACACCCCCACAGCCTACGTGAATAACAGCCCTTCCCCTGCGCCCACTTTCACTTCTTCCCAGCAGAACACTTGCAGTGTGCCAGACAGCAATTCTTCTTCCCCAAATCATCAGGGAGATGGAGTTTCACAGGTATCTGGTGAACAAATTCAGCCTTCAGCTACACCCCAGGAAACACAGCAGTGGCTTCTCAAAAACAGATTCTCTTCCTACACAAGACTGTTTTCTAATTTTTCAGGTGCCGACTTATTAAAACTGACAAAGGAGGATTTAGTTCAAATTTGTGGTGCAGCCGATGGAATTCGGCTCTATAATTCACTGAAGTCAAGGTCGGTTAGGCCGCGCTTAACCATCTATGTCTGCCAGGAGCAGCCGAGTAGCACACCGCTGCAAGGGCAGCAGCAAGCTGCAGGCGGTGGAGGCGAGAGTGGCAGTGGGACACCCTACGTTTATCATGCAATCTACCTGGAAGAAATGGTTGCCTCAGAAGTTGCTCGAAAACTTGCGTTGGTGTTTAATATTCCTTTCCACCAAATTAACCAGGTTTACAGACAGGGTCCCACTGGTATTCACATTCTTGTTAGTGATCAGGTAAATCAAGCAGGCATTTCCTTTTGCACTGATACTTACTTTTATACAGATGATTGTAGAACTGTAGAAAAATTCTGTGACCTCTTGCAAATAATCATGAGCATTGGGGATCAATGTTTGTTAAGAATTTATAACCAGGAGTTTCAGGCATCCTAA

Related Sequences

XP_004857900.1 Protein

Ubp1 PREDICTED: upstream-binding protein 1 isoform X1 [Heterocephalus glaber]

Length: 562 aa      View alignments
>XP_004857900.1
MAWVLKMDEVIESGLVHDFDASLSGIGQELGAGAYSMSDVLALPIFKQEDSNLPLDGETKNPPFQYVMCAATSPAVKLHDETLTYLNQGQSYEIRMLDNRKMGDMPEISGKLVKSIIRVVFHDRRLQYTEHQQLEGWKWNRPGDRLLDLDIPMSVGIIDRRTNPSQLNAVEFLWDPAKRTSAFIQVHCISTEFTPRKHGGEKGVPFRIQVDTFKQNENGEYTDHLHSASCQIKVFKPKGADRKQKTDREKMEKRTAHEKEKYQPSYDTTILTEMRLEPIIEDAVEHEQKKSSKRTLPADYGDSLAKRGSCSPWPDTPTAYVNNSPSPAPTFTSSQQNTCSVPDSNSSSPNHQGDGVSQVSGEQIQPSATPQETQQWLLKNRFSSYTRLFSNFSGADLLKLTKEDLVQICGAADGIRLYNSLKSRSVRPRLTIYVCQEQPSSTPLQGQQQAAGGGGESGSGTPYVYHAIYLEEMVASEVARKLALVFNIPFHQINQVYRQGPTGIHILVSDQVNQAGISFCTDTYFYTDDCRTVEKFCDLLQIIMSIGDQCLLRIYNQEFQAS