Sequence details NCBI ID: XM_004857834.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Trim71
Gene Name tripartite motif containing 71, E3 ubiquitin protein ligase
Entrez Gene ID 101711956

Database interlinks

Part of NW_004624788.1 (Scaffold)

For more information consult the page for NW_004624788.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

TRIM71 ENSCPOG00000004496 (Guinea pig)

Gene Details

tripartite motif containing 71, E3 ubiquitin protein ligase

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000004056, Guinea pig)

Protein Percentage 97.34%
CDS Percentage 92.72%
Ka/Ks Ratio 0.03533 (Ka = 0.012, Ks = 0.3398)

TRIM71 ENSG00000206557 (Human)

Gene Details

tripartite motif containing 71, E3 ubiquitin protein ligase

External Links

Gene Match (Ensembl Protein ID: ENSP00000373272, Human)

Protein Percentage 98.16%
CDS Percentage 91.51%
Ka/Ks Ratio 0.01558 (Ka = 0.008, Ks = 0.5143)

Trim71 ENSMUSG00000079259 (Mouse)

Gene Details

tripartite motif-containing 71

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000107447, Mouse)

Protein Percentage 93.56%
CDS Percentage 86.3%
Ka/Ks Ratio 0.03009 (Ka = 0.0302, Ks = 1.0042)

Trim71 ENSRNOG00000030098 (Rat)

Gene Details

tripartite motif containing 71, E3 ubiquitin protein ligase (Trim71), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000044089, Rat)

Protein Percentage 94.96%
CDS Percentage 87.0%
Ka/Ks Ratio 0.02571 (Ka = 0.0242, Ks = 0.9429)

Genome Location

Sequence Coding sequence

Length: 2610 bp    Location: 10859827..10934218   Strand: +
Raw sequence   
>XM_004857834.1
ATGGCTTCTTTCCCCGAGACCGACTTCCAGATCTGCCTGCTCTGCAAGGAGATGTGCGGCTCGCCGGCGCCGCTCTCCTCTAACTCGTCCGCATCGTCCTCGTCCTCGCAGACGTCCACGTCGTCCGGGGGCGGCGGCGGGGGCCCCGGAGCGGCGGCGCGCCGCCTGCACGTCCTGCCCTGTCTGCACGCCTTCTGCCGCCCCTGCCTCGAGGCGCACCGGTTGCCGGCGGCGGCGGGCAGCGGCGCTCCGGGAGAGCCGCTCAAGCTGCGCTGCCCGGTGTGCGACCAAAAAGTGGTCCTGGCCGAGGCGGCGGGCATGGACGCCCTGCCTTCGTCCGCCTTCCTGCTCAGCAACCTGCTGGACGCCGTGGTGGCTACGGCCGACGAGCCGCCGCCCAAGAATGGACGCGCCGGCGCCCCAGCGGGCGCGGGCGGCCACAGCAACCACCGGCACCACGCGCACCACGCGCACCCGCGTGCGTCCGCCTCCGCGCCGCCGCTGCCGCCCGCGCCCCCGCCGCCCGCGCCCTCGCGCTCCGCGCCCGGAGGCCCGGCTACCTCGCCGTCGGCGCTGCTCTTGCGCCGGCCCCACGGCTGCAGCTCCTGCGACGAGGGCAACGCTGCCTCCTCGCGCTGCCTCGACTGCCAGGAGCACCTGTGCGACAACTGCGTCCGCGCGCACCAGCGCGTGCGCCTCACCAAAGACCACTACATCGAGCGCGGCCCACCAGGTCCCGCGGCCGCGGCGGCGGCGCAGCAGCTGGGGCTCGGGCCGCCCTTCCCCGGCGCGCCCTTTTCTATACTCTCCGTGTTCCCGGAGCGCCTCGGCTTCTGTCAGCACCACGACGACGAGGTGCTGCACCTGTACTGTGATACATGCTCTGTGCCCATCTGTCGAGAGTGCACAATTGGCCGGCATGGGGGCCACAGCTTCATCTACCTCCAAGAGGCACTTCAGGACTCCAGGGCACTCACCATCCAGCTGCTGGCAGATGCACAGCAGGGTCGCCAGGCAATCCAGCTGAGCATCGAGCAAGCCCAGACGGTGGCAGAACAGGTGGAGATGAAGGCAAAGGTGGTACAGTCGGAGGTGAAAGCCGTCACTGCAAGGCACAAGAAAGCCCTGGAGGAGCGTGAATGCGAGTTGCTGTGGAAGGTAGAGAAGATCCGCCAGGTGAAAGCCAAGTCTCTGTATCTGCAGGTAGAGAAGCTAAGGCAAAACCTCAACAAGCTGGAGAGCACCATCAGTGCCGTCCAGCAGGTCTTGGAGGAGGGTAGAGCACTGGACATCCTACTTGCCCGAGACCGGATGCTGGCCCAGGTGCAGGAGCTAAAGACCGTGCGGAGCCTCTTGCAGCCCCAGGAAGACGATCGGGTTATGTTCACACCTCCTGACCAGGCACTGTACCTTGCCATCAAGTCCTTTGGGTTTGTTAGCAGTGGGGCCTTTGCACCTCTCACTAAGGCCGCAGGTGATGGCCTCAAGCGGGCCCTCCAGGGTAAGATGGCCTCATTCACTGTCATTGGCTATGACCATGACGGTGAGCCTCGCCTCTCAGGAGGTGACCTAATGTCAGCTGTGGTGCTGGGCCCTGATGGCAACCTGTTTGGTGCAGAGGTGAATGATCAGCAGAATGGGACTTACGTGGTGAGCTACCGGCCCCAGCTCGAGGGAGAGCATCTGGTGTCAGTGACCATGTGCAACCAGCACATTGAGAACAGCCCCTTTAAGGTGGTGGTCAAGTCAGGCCGCAGCTACGTGGGCATTGGGCTCCCGGGCCTGAGCTTTGGCAGTGAGGGTGACAGTGATGGCAAGCTCTGCCGCCCTTGGGGTGTGAGTGTAGATAAGGAGGGCTATATCATTGTCGCCGACCGCAGCAATAACCGCATCCAGGTGTTCAAGCCCTGTGGCTCCTTCCACCACAAATTTGGCACCCTAGGCTCTCGGCCTGGGCAGTTTGACCGACCCGCTGGAGTGGCCTGTGATGCCTCACGCAGGATTGTGGTGGCTGACAAGGACAATCATCGTATCCAGATCTTCACCTTTGAGGGCCAGTTTCTCCTCAAGTTTGGTGAGAAAGGAACCAAAAATGGGCAGTTCAACTACCCTTGGGATGTGGCAGTCAATTCTGAGGGCAAGATCCTGGTCTCAGACACCCGGAACCACCGGATCCAGCTGTTTGGGCCTGATGGGGTCTTCCTGAATAAGTACGGCTTCGAGGGGGCCCTCTGGAAGCACTTTGACTCCCCAAGGGGTGTGGCCTTCAACCATGAGGGTCACTTGGTGGTCACCGACTTCAACAACCACCGGCTCCTGGTCATTCACCCTGACTGTCAATCAGCACGCTTCCTGGGCTCAGAGGGCACCGCCAATGGGCAGTTCCTACGCCCACAAGGCGTGGCAGTGGATCAGGAAGGGCGCATCATCGTGGCAGATTCCAGGAACCACCGGGTACAGATGTTTGAGGCCAATGGCAGCTTCCTGTGCAAGTTTGGTGCTCAGGGCAGTGGCTTTGGGCAAATGGACCGCCCTTCTGGCATTGCCATTACCCCCGATGGAATGATCGTTGTGGTGGACTTTGGCAACAATCGAATCCTCATCTTCTAA

Related Sequences

XP_004857891.1 Protein

Trim71 PREDICTED: E3 ubiquitin-protein ligase TRIM71 [Heterocephalus glaber]

Length: 869 aa      View alignments
>XP_004857891.1
MASFPETDFQICLLCKEMCGSPAPLSSNSSASSSSSQTSTSSGGGGGGPGAAARRLHVLPCLHAFCRPCLEAHRLPAAAGSGAPGEPLKLRCPVCDQKVVLAEAAGMDALPSSAFLLSNLLDAVVATADEPPPKNGRAGAPAGAGGHSNHRHHAHHAHPRASASAPPLPPAPPPPAPSRSAPGGPATSPSALLLRRPHGCSSCDEGNAASSRCLDCQEHLCDNCVRAHQRVRLTKDHYIERGPPGPAAAAAAQQLGLGPPFPGAPFSILSVFPERLGFCQHHDDEVLHLYCDTCSVPICRECTIGRHGGHSFIYLQEALQDSRALTIQLLADAQQGRQAIQLSIEQAQTVAEQVEMKAKVVQSEVKAVTARHKKALEERECELLWKVEKIRQVKAKSLYLQVEKLRQNLNKLESTISAVQQVLEEGRALDILLARDRMLAQVQELKTVRSLLQPQEDDRVMFTPPDQALYLAIKSFGFVSSGAFAPLTKAAGDGLKRALQGKMASFTVIGYDHDGEPRLSGGDLMSAVVLGPDGNLFGAEVNDQQNGTYVVSYRPQLEGEHLVSVTMCNQHIENSPFKVVVKSGRSYVGIGLPGLSFGSEGDSDGKLCRPWGVSVDKEGYIIVADRSNNRIQVFKPCGSFHHKFGTLGSRPGQFDRPAGVACDASRRIVVADKDNHRIQIFTFEGQFLLKFGEKGTKNGQFNYPWDVAVNSEGKILVSDTRNHRIQLFGPDGVFLNKYGFEGALWKHFDSPRGVAFNHEGHLVVTDFNNHRLLVIHPDCQSARFLGSEGTANGQFLRPQGVAVDQEGRIIVADSRNHRVQMFEANGSFLCKFGAQGSGFGQMDRPSGIAITPDGMIVVVDFGNNRILIF