Sequence details NCBI ID: XM_004857730.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Hoxd1
Gene Name homeobox D1
Entrez Gene ID 101725087

Database interlinks

Part of NW_004624787.1 (Scaffold)

For more information consult the page for NW_004624787.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

HOXD1 ENSCPOG00000005509 (Guinea pig)

Gene Details

homeobox D1

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000004962, Guinea pig)

Protein Percentage 80.87%
CDS Percentage 83.03%
Ka/Ks Ratio 0.21455 (Ka = 0.1196, Ks = 0.5574)

HOXD1 ENSG00000128645 (Human)

Gene Details

homeobox D1

External Links

Gene Match (Ensembl Protein ID: ENSP00000328598, Human)

Protein Percentage 85.31%
CDS Percentage 86.35%
Ka/Ks Ratio 0.12629 (Ka = 0.0722, Ks = 0.5716)

Hoxd1 ENSMUSG00000042448 (Mouse)

Gene Details

homeobox D1

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000043078, Mouse)

Protein Percentage 84.38%
CDS Percentage 82.19%
Ka/Ks Ratio 0.08001 (Ka = 0.0808, Ks = 1.0095)

Hoxd1 ENSRNOG00000001572 (Rat)

Gene Details

homeo box D1 (Hoxd1), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000002140, Rat)

Protein Percentage 84.38%
CDS Percentage 81.77%
Ka/Ks Ratio 0.07811 (Ka = 0.0827, Ks = 1.0591)

Genome Location

Sequence Coding sequence

Length: 963 bp    Location: 13325276..13326824   Strand: +
Raw sequence   
>XM_004857730.1
ATGAGCTCCTATCTGGAATACGTGTCGTGCGGCGGCGGCGGGGCTGGCGGAGACGTGCTCAGGTTTGCACCCAAGTTCTGCCGCTCCGACGCCCGGCCCGTGGTCCTGCAGCCCACCTTCCCCCTGGGCAGCGGCGACGGCGCCTTCGTCAGCTGCCTGCCCCTGTCCGCGCCTTCGCCCCCTGCAGCCTCGGCACAGCCGCCCGCGCCGCCCCGGGCCGCGCCCCGCTATGCCCAGTGCACGCTCGAGGGCGCCTACGAGCCCGGCGCCGCACCTGCCGGGGGCGCGGACTACAGCTTCCTGGGGCCGGGGGCCGCGTACGACTTCGCGGGCGCTCTCGGGCGCCCCGCCGACGACAGTGGGGCGCACGTCCATTACGCCGCCTCTGCTGTTTTCTCGGGAGGCGGCTCCTTCCTCCTCAGCGGCCAGGTGGATTGCGCGGCCTTTGGCGAGACGGGCCCCTTCCCGGCGTGTCTCAAAGAGCCAGCTGATGGCCACCCCGGGGCCTTCCAGACTGCGTCCCCTGCCCCCGGAGCCTACCCTAAGTCCAGCTCTCCGACGTCCGGCCTCCCCGCGGCCTTCAGCACATTCGAGTGGATGAAAGTGAAGAGGAATGCCCCTAAGAAAAGCAAACTCGCAGAGTATGGAGCCGCTAGCCCCCCCAGCGCGATTCGCACGAATTTCAGCACCAAGCAACTGACAGAACTGGAGAAAGAGTTTCATTTCAATAAGTACTTAACTCGAGCCCGACGCATTGAGATAGCCAACTGCTTGCAGCTGAATGACACCCAAGTCAAAATCTGGTTCCAGAACCGCAGGATGAAGCAGAAGAAAAGGGAACGCGAAGGGCTCCTGGCTACAGCCAGCTCTGTAGCCTCCCTCCAACTTCCCCTCTCGGGACCGAGCCCCACCAAGTCTGGCAGGAACCCGGGCAGCCCTGCTCAGGCCCGAGAGCCTTCCTGA

Related Sequences

XP_004857787.1 Protein

Hoxd1 PREDICTED: homeobox protein Hox-D1 [Heterocephalus glaber]

Length: 320 aa      View alignments
>XP_004857787.1
MSSYLEYVSCGGGGAGGDVLRFAPKFCRSDARPVVLQPTFPLGSGDGAFVSCLPLSAPSPPAASAQPPAPPRAAPRYAQCTLEGAYEPGAAPAGGADYSFLGPGAAYDFAGALGRPADDSGAHVHYAASAVFSGGGSFLLSGQVDCAAFGETGPFPACLKEPADGHPGAFQTASPAPGAYPKSSSPTSGLPAAFSTFEWMKVKRNAPKKSKLAEYGAASPPSAIRTNFSTKQLTELEKEFHFNKYLTRARRIEIANCLQLNDTQVKIWFQNRRMKQKKREREGLLATASSVASLQLPLSGPSPTKSGRNPGSPAQAREPS