Sequence details NCBI ID: XM_004857606.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Scn9a
Gene Name sodium channel, voltage-gated, type IX, alpha subunit
Entrez Gene ID 101710863

Database interlinks

Part of NW_004624787.1 (Scaffold)

For more information consult the page for NW_004624787.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

SCN9A ENSCPOG00000013017 (Guinea pig)

Gene Details

sodium channel, voltage-gated, type IX, alpha subunit

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000011719, Guinea pig)

Protein Percentage 94.68%
CDS Percentage 92.55%
Ka/Ks Ratio 0.10989 (Ka = 0.0279, Ks = 0.2539)

SCN9A ENSG00000169432 (Human)

Gene Details

sodium channel, voltage-gated, type IX, alpha subunit

External Links

Gene Match (Ensembl Protein ID: ENSP00000386306, Human)

Protein Percentage 91.81%
CDS Percentage 90.0%
Ka/Ks Ratio 0.12613 (Ka = 0.0441, Ks = 0.3496)

Scn9a ENSMUSG00000075316 (Mouse)

Gene Details

sodium channel, voltage-gated, type IX, alpha

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000097641, Mouse)

Protein Percentage 91.43%
CDS Percentage 86.21%
Ka/Ks Ratio 0.08066 (Ka = 0.0495, Ks = 0.6138)

Scn9a ENSRNOG00000006639 (Rat)

Gene Details

sodium channel, voltage-gated, type IX, alpha (Scn9a), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000059170, Rat)

Protein Percentage 91.69%
CDS Percentage 86.37%
Ka/Ks Ratio 0.07225 (Ka = 0.0451, Ks = 0.6247)

Genome Location

Sequence Coding sequence

Length: 5934 bp    Location: 4148201..3997887   Strand: -
Raw sequence   
>XM_004857606.1
ATGGCAACATTGCCTCCCCCAGGACCTCAGAGCTTTGTCCGCTTCACAAAACAATCTCTTGCCCACATTGAGCAGCGTATTGCTGAAAGAAAAGCACAGGAACCCAAAGAAGAAAAGAAAGATGATGATGAAGAAGGCCCAAAGCCCAGCAGGGACTTGGAAGCTGGCAAACAGTTGCCCTTCATCTACGGAGACATTCCTCCAGGCATGGTGTCAGAGGCCCTGGAGGACCTGGACCCCTACTATGCAGACAAAAAAACTTTTATAGTATTGAACAAAGGGAAAGCAATCTTCCGTTTCAATGCCACACCTGCTTTGTACATATTATCTCCTTTCAGTCCTCTAAGAAGAATATCTATTAAGATTTTAGTACATTCCTTGTTCAGCATGCTTATCATGTGCACAATTCTGACAAACTGCATATTTATGACCATGAGTAGCCCTCCGGAATGGACCAAAAATGTAGAGTACACTTTTACTGGAATATACACTTTTGAATCACTTATAAAAATCCTTGCAAGAGGCTTCTGTGTAGGAGAATTCACTTTCCTTCGGGATCCATGGAACTGGCTGGATTTTGTCGTGATTGTTTTTGCGTATTTAACAGAATTTGTAAACCTAGGCAATGTTTCAGCTCTTCGAACTTTCAGAGTATTGAGAGCTTTGAAAACTATTTCTGTAATTCCAGGCCTGAAGACCATTGTGGGGGCGCTCATCCAGTCAGTGAAGAAACTGTCTGATGTCATGATCCTGACTGTGTTCTGTCTGAGTGTGTTTGCACTAATAGGGCTGCAGCTGTTCATGGGCAACCTCAGGCACAAATGTGTGCAGCTTGAATTTGCAGAAAATGAAACAGCTATCAGCGCGCTGGATAACTTTGAGAATAAAGAAGACTTGAAAAAATATGTTTATTACTTGGAGGGATCCAAAGATGCTCTCCTTTGTGGTTTCAGCACAGATTCAGGCCAGTGTCCAGAAGGGTACAAATGTGTGAAGCTTGGCCGAAACCCAGATTATGGCTACACCAGCTTTGACACTTTCAGCTGGGCCTTTTTAGCCTTGTTCAGGCTCATGACACAAGATTACTGGGAAAACCTTTACCAACAGACACTGCGAGCTGCTGGCAAAACCTACATGATCTTCTTTGTAGTGGTGATTTTCCTGGGTTCCTTTTATCTAATAAACTTGATTCTGGCTGTGGTTGCCATGGCCTATGAAGAACAGAACCAGGCAAACATTGAAGAAGCTAAACAGAAGGAGTTAGAATTTCAACAGATGTTAGATCAACTCAAAAGAGAGCAAGAAGAAGCTGAGGCAATAGCAGTGGCAGCAGCTGAATATACAAGTATTGGACGAAGCCAAATTATGGGCCTCTCAGAAAGCTCTTCGGAAACATCCAAACTGAGCTCAAAAAGTGCTAAAGAAAGAAGAAACAGAAGAAAGAAAAAGAATCAAAAGAAACTTTCCAGTGGAGAGGAAAAGAGAGATGATGAAAAATTGTCCAAGTCAGAATCAGATGGGAGCGTCCGAAGGAAAAGCTTCTTCCTCGGTGTTGAAGGGCCTAGACAGGCTCGCGAGAAGAGACTCTCCACCCCTAATCAGTCACCACTCAGCATCCGTGGCTCCTTGTTCTCTCCAAGGCGAAGCAGCAGGACAAGTCTTTTCAGTTTCAAGGGTCGAGGAAAAGACATAGGATCTGAGACTGAATTTGCTGATGATGAACACAGCATTTTTGGAGACAATGAGAGCAGACGGGGCTCACTCTTCCTGCCCCCGAGGTTCCGGGAGCGGCGCAGCAGTAACATCAGCCAAGCCAGTAGGTCCCCCCCAATGCTGCCAGTGAACGGGAAGATGCACAGTGCCGTGGACTGCAATGGTGTGGTTTCCCTGGTTGATGGACCCTCAGCCCTCATGCTTCCCAATGGACAGCTTCTGCCAGAGGGTACAACCATTCAAATACGCAAAAAAAGATGTTCCAGTTCTTATTTTCTTTCAGAAGATATGCTGAATGATCCCCATGTCCGACAAAGAGCAATGAGTAGAGCAAGCATCCTCACAAACACTGTAGAAGAACTTGAAGAGTCCAGACAAAAATGTCCACCTTGGTGGTACAGATTTGCACACACATTTTTGATTTGGAATTGCTCTCCGTATTGGATAAAATTCAAAAAGTTTATCTATTTTATTGTAATGGATCCTTTTGTAGATCTTGCAATTACCATTTGCATAGTTTTAAATACGTTATTTATGGCTATGGAACACCATCCAATGACTCTAGAATTCAAAAATGTACTCAGTGTGGGAAATTTGGTCTTTACTGGAATCTTTGCAGCTGAAATGGTTTTGAAATTAATTGCCATGGATCCATATGAGTATTTCCAAGTAGGCTGGAATATTTTTGACAGCCTTATTGTGACTTTAAGTTTGGTAGAACTTTTTCTATCACACGTGGAAGGGTTATCAGTTCTGAGATCATTCAGACTGCTCCGTGTGTTCAAGTTGGCAAAATCCTGGCCAACACTGAACATGCTGATAAAGATCATTGGCAATTCCATGGGGGCTCTGGGTAACCTCACCTTGGTGTTGGCCATCATCGTCTTCATCTTTGCTGTGGTCGGCATGCAGCTCTTTGGCAAGAGCTACAAAGAATGTGTCTGCAAGATCAACGAAGACTGTACACTCCCACGCTGGCACATGAATGACTTCTTCCACTCCTTCCTGATCGTGTTCCGCGTGCTGTGTGGAGAGTGGATAGAGACCATGTGGGACTGCATGGAGGTCGCTGGTCAGGCCATGTGCCTTATTGTTTACATGATGGTCATGGTCATTGGAAACCTTGTGGTCCTCAACCTGTTTCTTGCTTTATTATTGAGTTCATTTAGTTCTGACAATCTCACAGCCATTGAAGATGATCCCGATGCAAACAACCTCCAGATTGCTGTGGCCAGAATTAAAAAGGGAATAGATTATGTGAAACAGACTGCGCGTGAGTTTATTCTAAAAGCATTTTCAAAAAAGCCAAAAGTTCCCCAGGTAGTAAGACAAGTGGAAGATCTAAACAGCAAAAAGGAAAACTGTATCTCTAACCATACACTTGCTGAAATGAGCAAAGATAGCCATTTCCATAAGGAAAATGAGAAAAGCAGTGGCTTTGAAAGCAGCGTGGACAGAAACTTGGTGGAAGAAAGTGATTATCAATCATTTATTCATAATCCCAGCCTCACAGTGATAGTGCCAATTGCACCTGGGGAATCTGATTTGGAAAATATGAATACTGAGGAACTTAGTAGTGATTCTGACAGTGACTATAGCAAAGAGAGATTGAACCGATCAAGTTCCTCTGAGTGCAGCACAGTTGATAACCCTGTGCCAGGAGAAGGAGAAGAAGCAGAGTCTGAACCTGTGAATTCAGATGAGCCAGAAGCCTGCTTTACAGATGGTTGTGTTCGGAGATTCCCATGCTGCCAGGTTAGCATAGAGTCAGGGAAAGGAAAAATCTGGTGGAACATCAGGAAAACCTGCTACAGGATAGTTGAACACAGTTGGTTTGAAAGCTTCATTGTTCTCATGATCCTGCTGAGCAGTGGAGCCTTGGCTTTTGAAGATATATATATTGAAAAAAAAAAGACCATTAAGATTATCCTGGAGTATGCTGACAAGATATTTACCTACATCTTCATCCTGGAAATGCTTTTAAAATGGGTGGCATATGGGTATAAAACGTATTTCACCAATGCATGGTGTTGGCTGGATTTCTTAATTGTTGATGTTTCTGTGGTTACTTTAGTTGCTAGCACTCTTGGCTATTCAGACCTTGGGCCCATTAAATCTCTTCGAACACTTAGAGCATTAAGGCCTCTAAGAGCCTTATCTAGATTTGAAGGAATGAGGGTGGTTGTGAATGCACTCATCGGAGCAATTCCTTCAATCATGAATGTGCTCCTTGTATGTCTCATATTCTGGCTAATATTTAGCATCATGGGAGTAAATTTGTTTGCTGGCAAGTTCTATGAGTGTGTTAATACCACAGATGGGTTACGGTTTCTAGACAGTCAAGTCCACAATCGCTCCGAGTGCTTTGCCCTTATGAATGTCACTTCAGATGTGCGATGGAAAAACCTGAAAGTGAACTTTGATAATGTTGGACTTGGTTATCTGTCTTTGCTTCAAGTTGCAACATTTAAGGGATGGATGGATATTATGTATGCAGCAGTTGATTCTGTTAATGTAAACCAGCAGCCGAGATATGAATACAACCTTTACATGTATATTTATTTTGTCATCTTTATCATCTTTGGGTCATTCTTCACTCTGAATTTGTTCATTGGTGTCATCATAGATAATTTCAACCAACAAAAAAAGAAGCTTGGAGGTCAAGACATCTTCATGACAGAAGAACAGAAGAAATACTATAATGCAATGAAAAAGCTGGGGTCCAAGAAACCACAAAAGCCGATTCCCCGGCCAGGGAACAAGTTCCAAGGATGCATATTTGACCTAGTAACAAACCAAGCTTTTGACATCACTATCATGGTTCTTATCTGCCTCAATATGGTAACCATGATGGTAGAAAAAGAAGGACAAAGTGATGAAATGATTAATGTTTTGTACTGGATAAATGTTGTTTTTATTATCCTTTTCACTGGAGAATGTGTGCTGAAACTAATCTCCCTCAGACATTACTACTTCACAGTGGGATGGAACATTTTTGATTTTGTGGTTGTGATTCTCTCCATTGTAGGTATGTTTCTTGCGGAGCTGATAGAGAAGTATTTTGTGTCCCCTACCCTGTTCCGAGTGATACGTCTGGCCAGGATTGGCAGAATCCTTCGTCTGATCAAAGGAGCAAAGGGGATCCGCACGCTGCTCTTTGCTTTGATGATGTCTCTTCCTGCTCTGTTTAACATCGGCCTCCTGCTCTTCCTGGTCATGTTCATCTACGCCATCTTTGGAATGTCCAACTTTGCCTATGTTAAAAAGGAAGCTGGAATTGATGACATGTTCAACTTTGAGACCTTTGGCAACAGCATGATCTGCCTGTTCCAAATTACCACCTCTGCGGGCTGGGATGGACTGCTCGCTCCCATTCTTAATAGTGGACCTCCAGACTGTGACCCTGAAAAAGAGCACCCTGGGAGCTCCGTGAAGGGTGACTGTGGGAACCCATCTGTTGGGATTTTCTATTTTGTCAGTTACATCATCATTTCCTTTCTGGTGGTGGTGAACATGTACATCGCTGTCATCCTGGAGAACTTCAGCGTTGCCACTGAAGAAAGTACTGAACCCCTGAGTGAGGATGACTTTGAGATGTTCTATGAGGTGTGGGAGAAGTTCGATCCTGATGCAACTCAGTTCATAGAATACAGCAAGCTCTCCGATTTTGCAGCTGCTCTGGATCCCCCTCTTCTCATAGCAAAACCAAACAAAGTCCAGCTCATTGCCATGGACCTGCCCATGGTCAGTGGAGACCGGATCCACTGCCTGGACATCTTATTTGCCTTTACAAAGCGGGTTTTGGGTGAGAGTGGAGAGATGGATTCTCTTCGTTCACAAATGGAAGAAAGGTTCATGTCTGCAAATCCTTCTAAAGTATCCTATGAACCTATCACAACTACACTAAAAAGAAAGCAAGAGGATGTGTCTGCTACTGTCATACAGCGTGCTTACAGACATTACCGCTTACGGAAAAATGTCAAAAATATATCAAGTATATACATGAAAGACGGAGACAGAGATGATGACTTGCCCAACAAAGAAGAGATAGTTTTTGATAATGTTAATGGGAACTCCAGTCCAGAAAAAACAGATGCAACTGCATCTACCATCTCTCCACCTTCATATGATAGTGTAACCAAGCCAGAGCAAGAGAAATACGAAACAGACAAAACAGAAAAAGAAGACAAAGGGAAAGATGGCAAGGACAGCAAAAAATAG

Related Sequences

XP_004857663.1 Protein

Scn9a PREDICTED: sodium channel protein type 9 subunit alpha [Heterocephalus glaber]

Length: 1977 aa      View alignments
>XP_004857663.1
MATLPPPGPQSFVRFTKQSLAHIEQRIAERKAQEPKEEKKDDDEEGPKPSRDLEAGKQLPFIYGDIPPGMVSEALEDLDPYYADKKTFIVLNKGKAIFRFNATPALYILSPFSPLRRISIKILVHSLFSMLIMCTILTNCIFMTMSSPPEWTKNVEYTFTGIYTFESLIKILARGFCVGEFTFLRDPWNWLDFVVIVFAYLTEFVNLGNVSALRTFRVLRALKTISVIPGLKTIVGALIQSVKKLSDVMILTVFCLSVFALIGLQLFMGNLRHKCVQLEFAENETAISALDNFENKEDLKKYVYYLEGSKDALLCGFSTDSGQCPEGYKCVKLGRNPDYGYTSFDTFSWAFLALFRLMTQDYWENLYQQTLRAAGKTYMIFFVVVIFLGSFYLINLILAVVAMAYEEQNQANIEEAKQKELEFQQMLDQLKREQEEAEAIAVAAAEYTSIGRSQIMGLSESSSETSKLSSKSAKERRNRRKKKNQKKLSSGEEKRDDEKLSKSESDGSVRRKSFFLGVEGPRQAREKRLSTPNQSPLSIRGSLFSPRRSSRTSLFSFKGRGKDIGSETEFADDEHSIFGDNESRRGSLFLPPRFRERRSSNISQASRSPPMLPVNGKMHSAVDCNGVVSLVDGPSALMLPNGQLLPEGTTIQIRKKRCSSSYFLSEDMLNDPHVRQRAMSRASILTNTVEELEESRQKCPPWWYRFAHTFLIWNCSPYWIKFKKFIYFIVMDPFVDLAITICIVLNTLFMAMEHHPMTLEFKNVLSVGNLVFTGIFAAEMVLKLIAMDPYEYFQVGWNIFDSLIVTLSLVELFLSHVEGLSVLRSFRLLRVFKLAKSWPTLNMLIKIIGNSMGALGNLTLVLAIIVFIFAVVGMQLFGKSYKECVCKINEDCTLPRWHMNDFFHSFLIVFRVLCGEWIETMWDCMEVAGQAMCLIVYMMVMVIGNLVVLNLFLALLLSSFSSDNLTAIEDDPDANNLQIAVARIKKGIDYVKQTAREFILKAFSKKPKVPQVVRQVEDLNSKKENCISNHTLAEMSKDSHFHKENEKSSGFESSVDRNLVEESDYQSFIHNPSLTVIVPIAPGESDLENMNTEELSSDSDSDYSKERLNRSSSSECSTVDNPVPGEGEEAESEPVNSDEPEACFTDGCVRRFPCCQVSIESGKGKIWWNIRKTCYRIVEHSWFESFIVLMILLSSGALAFEDIYIEKKKTIKIILEYADKIFTYIFILEMLLKWVAYGYKTYFTNAWCWLDFLIVDVSVVTLVASTLGYSDLGPIKSLRTLRALRPLRALSRFEGMRVVVNALIGAIPSIMNVLLVCLIFWLIFSIMGVNLFAGKFYECVNTTDGLRFLDSQVHNRSECFALMNVTSDVRWKNLKVNFDNVGLGYLSLLQVATFKGWMDIMYAAVDSVNVNQQPRYEYNLYMYIYFVIFIIFGSFFTLNLFIGVIIDNFNQQKKKLGGQDIFMTEEQKKYYNAMKKLGSKKPQKPIPRPGNKFQGCIFDLVTNQAFDITIMVLICLNMVTMMVEKEGQSDEMINVLYWINVVFIILFTGECVLKLISLRHYYFTVGWNIFDFVVVILSIVGMFLAELIEKYFVSPTLFRVIRLARIGRILRLIKGAKGIRTLLFALMMSLPALFNIGLLLFLVMFIYAIFGMSNFAYVKKEAGIDDMFNFETFGNSMICLFQITTSAGWDGLLAPILNSGPPDCDPEKEHPGSSVKGDCGNPSVGIFYFVSYIIISFLVVVNMYIAVILENFSVATEESTEPLSEDDFEMFYEVWEKFDPDATQFIEYSKLSDFAAALDPPLLIAKPNKVQLIAMDLPMVSGDRIHCLDILFAFTKRVLGESGEMDSLRSQMEERFMSANPSKVSYEPITTTLKRKQEDVSATVIQRAYRHYRLRKNVKNISSIYMKDGDRDDDLPNKEEIVFDNVNGNSSPEKTDATASTISPPSYDSVTKPEQEKYETDKTEKEDKGKDGKDSKK