Details from NCBI annotation

Gene Symbol Lsmd1
Gene Name LSM domain containing 1
Entrez Gene ID 101705076

Database interlinks

Part of NW_004624786.1 (Scaffold)

For more information consult the page for NW_004624786.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

LSMD1 ENSCPOG00000004424 (Guinea pig)

Gene Details

LSM domain containing 1

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000003992, Guinea pig)

Protein Percentage 96.8%
CDS Percentage 94.4%
Ka/Ks Ratio 0.0758 (Ka = 0.0148, Ks = 0.1954)

LSMD1 ENSG00000183011 (Human)

Gene Details

LSM domain containing 1

External Links

Gene Match (Ensembl Protein ID: ENSP00000332103, Human)

Protein Percentage 78.4%
CDS Percentage 78.13%
Ka/Ks Ratio 0.23863 (Ka = 0.1683, Ks = 0.7054)

Lsmd1 ENSMUSG00000059278 (Mouse)

Gene Details

LSM domain containing 1

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000123155, Mouse)

Protein Percentage 95.2%
CDS Percentage 87.47%
Ka/Ks Ratio 0.046 (Ka = 0.0262, Ks = 0.5699)

Lsmd1 ENSRNOG00000009823 (Rat)

Gene Details

LSM domain containing 1 (Lsmd1), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000013071, Rat)

Protein Percentage 95.2%
CDS Percentage 86.93%
Ka/Ks Ratio 0.04296 (Ka = 0.0263, Ks = 0.6116)

Genome Location

Sequence Coding sequence

Length: 378 bp    Location: 10437835..10436970   Strand: -
>XM_004857458.1
ATGGCTGGAGCTGGGCCGACAATGTTACTACGAGAGGAGAATGGCTGTTGCAGTCGGCGTCAAAGCAGCTCCAGCGCCGGGGACTCGGACGGGGATCATGAGGATTCTCCAGCTCCGCGTGCCCGGCAGCAACTGGAGGCGCTGCTCAACAAGACTATGCGTATTCGCATGACAGATGGGCGGACACTAGTCGGCTGCTTCCTCTGCACGGACCGCGACTGCAATGTCATTCTGGGCTCGGCACAGGAGTTCCTCAAGCCGACGGATTCCTTCTCTGCTGGGGAACCCCGTGTGCTGGGTCTGGCCATGGTACCGGGACACCACATCGTTTCTATTGAGGTGCAGAGGGAGAGCCTGGCAGGGCCCCCATATCTCTGA

Related Sequences

XP_004857515.1 Protein

Lsmd1 PREDICTED: LSM domain-containing protein 1 [Heterocephalus glaber]

Length: 125 aa      View alignments
>XP_004857515.1
MAGAGPTMLLREENGCCSRRQSSSSAGDSDGDHEDSPAPRARQQLEALLNKTMRIRMTDGRTLVGCFLCTDRDCNVILGSAQEFLKPTDSFSAGEPRVLGLAMVPGHHIVSIEVQRESLAGPPYL