Sequence details NCBI ID: XM_004857155.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Tsr1
Gene Name TSR1, 20S rRNA accumulation, homolog (S. cerevisiae), transcript variant X2
Entrez Gene ID 101700596

Database interlinks

Part of NW_004624786.1 (Scaffold)

For more information consult the page for NW_004624786.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

TSR1 ENSCPOG00000014833 (Guinea pig)

Gene Details

TSR1, 20S rRNA accumulation, homolog (S. cerevisiae)

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000013366, Guinea pig)

Protein Percentage 84.43%
CDS Percentage 86.76%
Ka/Ks Ratio 0.36972 (Ka = 0.1087, Ks = 0.294)

TSR1 ENSG00000167721 (Human)

Gene Details

TSR1, 20S rRNA accumulation, homolog (S. cerevisiae)

External Links

Gene Match (Ensembl Protein ID: ENSP00000301364, Human)

Protein Percentage 88.61%
CDS Percentage 89.14%
Ka/Ks Ratio 0.19682 (Ka = 0.061, Ks = 0.3098)

Tsr1 ENSMUSG00000038335 (Mouse)

Gene Details

TSR1 20S rRNA accumulation

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000039027, Mouse)

Protein Percentage 86.24%
CDS Percentage 85.27%
Ka/Ks Ratio 0.14794 (Ka = 0.077, Ks = 0.5208)

Tsr1 ENSRNOG00000002980 (Rat)

Gene Details

Protein Tsr1; RCG34104, isoform CRA_a

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000003992, Rat)

Protein Percentage 85.05%
CDS Percentage 84.22%
Ka/Ks Ratio 0.15772 (Ka = 0.0864, Ks = 0.5479)

Genome Location

Sequence Coding sequence

Length: 2274 bp    Location: 4998843..4989037   Strand: -
Raw sequence   
>XM_004857155.1
ATGGCGGCGCACCGTTCCGGCCCGCTCAAGCAACATAATAAAGCTCATAAAGGCGGGCGGCATCGAGGTCGAGGATCCACACAGCGAGATGGCAAGGGCCATGTAGGACTGAAAGTCCTATGCAAGAAGGTGAGAAAGGAGCTCAGCAGAGTAGACCAGAGGCATCGCGCCAGCCAGCTCCGAAAGCAGAAAAAGGAGGCGGTTCTGGCTGAGAAGAGACAGCTAGGCAGCAAAGATGGGGCTCCTCATCAGGTGCTGGTGGTTCCTTTGCATAACAGAATTTCCTTGCTTGAAGCCCTTCGCCTGCTGCAGGATAGGGACACAGGAATTGTGCACCTGCAGGAATGGGAGAGCACCCATTGCTTTATGCTGCTGTGCCCCCGTTTGAAACATCGGTGGTTTTTTACATCTGCAAAGCCTGGGGATCTGCACACGGTGTTAGACATGGCTAAAGTGGCTGATACCATCCTGTTCCTCCTTGATCCACTAGAAGGCTGGGACAGCACTGGGGATTACTGCCTTTCCTGCCTTTTTGCTCAGGGGCTTCCCACCTATACACTAGCTGTCCAAGGGGTTTCTGGCCTCCCACCAAAGAAGCAATTAGATTCCAGAAAGAAGCTAAGTAAAGTAGTGGAGAAGCGCTTTCCTGATGACAAATTCTTCTTGTTAAACACTCAACAGGAGGCAGGGATGCTGCTTAGGCAGTTGGCTAACCAAAAGCAACGGCATCTTGCTTTTCGAGATCGTCGGGCCTACTTGTTTGCTTATGCTGCTGATTTTGTGCCTAGTGAAGAGAGTAACTGGTTAGGCACCTTGAAAATCTCAGGCTATGTTCGTGGGCAGACTCTGAATGTAAATAGCTTGCTGCATATCGTTGGACATGGTGATTTTCAAATGAAGCAGATAGATGCCCCCGTGGACCCTTTCCCTTTAAATCCTAGAGTGATTAAATCTCAGAAGGACCCAGGCATGGCAGTGGAGATTTGTGCTACAGAAGCTGTGGCTGATATGGAAGAAGACCTTAAGGTCCTAATGAAGGCAGACCCTAGCAGACAGGAGTCTTTGCAAACAGAGGTTATCCCAGACCCAATGGATGGGGAGCAAACTTGGCCCACTGAGGATGAGCTGAGTGAGGCAAAGGACTTGTTGAAGGAAAGCTCCAAGGTGGTCAAGAAGGTCCCCAAAGGAACATCCAGTTACCAAGCTGAATGGATTTTGGATGAAGGTGGTGAAAGTTGTGGGGAAGGAGATGACTATGATGATATAGAACATGAGAATTTTATGGAAGAGGAGTCTCAGGATGAGAGTAGTGAAGAAGAGGAGGAGGAAGTATGTGAAACTATGACAATAGGGGAGTCAGTGCATGATGATCTGTATGATGAGAAAATGGATGAAGAGGCTGAGGAAAAAATGTTAGAGAAATATAAACAAGAAAGACTGGAAGAGATGTTTCCAGATGAAATGGACACACCCCGTGATGTGGCTGCTAGAATTCGATTTCAGAAATATAGAGGCCTCAAGAGTTTTCGGACATCTCCATGGGATCCTAAGGAAAACCTTCCTCGAGATTATGCTCGTATCTTTCAGTTTCAGAACTTTACTAATACTAGGAGACGTGTCTTTAAAGAGATTGAGGAAAAAGAGGTTGAAGGAGCTGAGGTTGGCTGGTATGTCACACTTCATGTCTCTGAAGTCCCTGTCTCAGTGGTTGGGGACTTCAGGAGAGGAGCACCCTTGATTGCATTTTCTTTGCTACCTCATGAACAGAAGATGTCAGTATTGAACATGGTGGTGAGCCGGAACCCTGGCAACACTGAACCTGTGAAAGCCAAAGAGGAACTGATCTTCCACTGTGGATTCAGACGCTTCCGAGCCTCACCTTTATTTTCTCAGCACACTGCAGCGGATAAACACAAATTTCAGAGATTTCTGACTGCTGATGAAGCCGTGGTGGCAACAGTATATGCACCAATTACTTTTCCTCCTGCATCTGTGCTGCTTTTCAAACAGAAAAGCAATGAGGATGTACTGTGGTTTAAACCAGTGGAACTGAGGACAAAGTGGGGCCGCAGGGGACACATCAAGGAGCCATTAGGTACCCATGGCCACATGAAATGTACTTTTGATGGGAAACTAAAATCTCAGGACACAGTACTGATGAACCTCTATAAACGAGTTTTCCCTAAATGGACTTATGATCCATATGTACCAGACCCAGTACCTTGGGTGAAAAGTGAGATTTCTTCAACAACACCTGAAGTGGACATGGAATAA

Related Sequences

XP_004857212.1 Protein

Tsr1 PREDICTED: pre-rRNA-processing protein TSR1 homolog isoform X2 [Heterocephalus glaber]

Length: 757 aa      View alignments
>XP_004857212.1
MAAHRSGPLKQHNKAHKGGRHRGRGSTQRDGKGHVGLKVLCKKVRKELSRVDQRHRASQLRKQKKEAVLAEKRQLGSKDGAPHQVLVVPLHNRISLLEALRLLQDRDTGIVHLQEWESTHCFMLLCPRLKHRWFFTSAKPGDLHTVLDMAKVADTILFLLDPLEGWDSTGDYCLSCLFAQGLPTYTLAVQGVSGLPPKKQLDSRKKLSKVVEKRFPDDKFFLLNTQQEAGMLLRQLANQKQRHLAFRDRRAYLFAYAADFVPSEESNWLGTLKISGYVRGQTLNVNSLLHIVGHGDFQMKQIDAPVDPFPLNPRVIKSQKDPGMAVEICATEAVADMEEDLKVLMKADPSRQESLQTEVIPDPMDGEQTWPTEDELSEAKDLLKESSKVVKKVPKGTSSYQAEWILDEGGESCGEGDDYDDIEHENFMEEESQDESSEEEEEEVCETMTIGESVHDDLYDEKMDEEAEEKMLEKYKQERLEEMFPDEMDTPRDVAARIRFQKYRGLKSFRTSPWDPKENLPRDYARIFQFQNFTNTRRRVFKEIEEKEVEGAEVGWYVTLHVSEVPVSVVGDFRRGAPLIAFSLLPHEQKMSVLNMVVSRNPGNTEPVKAKEELIFHCGFRRFRASPLFSQHTAADKHKFQRFLTADEAVVATVYAPITFPPASVLLFKQKSNEDVLWFKPVELRTKWGRRGHIKEPLGTHGHMKCTFDGKLKSQDTVLMNLYKRVFPKWTYDPYVPDPVPWVKSEISSTTPEVDME