Sequence details NCBI ID: XM_004857149.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Rpa1
Gene Name replication protein A1, 70kDa
Entrez Gene ID 101698906

This gene is present in the GenAge database and has been identified as potentially important to ageing in humans.

Database interlinks

Part of NW_004624786.1 (Scaffold)

For more information consult the page for NW_004624786.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

RPA1 ENSCPOG00000000035 (Guinea pig)

Gene Details

replication protein A1, 70kDa

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000000030, Guinea pig)

Protein Percentage 93.51%
CDS Percentage 92.64%
Ka/Ks Ratio 0.15699 (Ka = 0.034, Ks = 0.2167)

RPA1 ENSG00000132383 (Human)

Gene Details

replication protein A1, 70kDa

External Links

Gene Match (Ensembl Protein ID: ENSP00000254719, Human)

Protein Percentage 90.57%
CDS Percentage 88.13%
Ka/Ks Ratio 0.11917 (Ka = 0.0501, Ks = 0.4206)

Rpa1 ENSMUSG00000000751 (Mouse)

Gene Details

replication protein A1

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000000767, Mouse)

Protein Percentage 86.81%
CDS Percentage 85.29%
Ka/Ks Ratio 0.12973 (Ka = 0.0709, Ks = 0.5467)

Rpa1 ENSRNOG00000003123 (Rat)

Gene Details

replication protein A1 (Rpa1), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000004229, Rat)

Protein Percentage 88.69%
CDS Percentage 86.36%
Ka/Ks Ratio 0.10859 (Ka = 0.0577, Ks = 0.5309)

Genome Location

Sequence Coding sequence

Length: 1851 bp    Location: 4547904..4605015   Strand: +
Raw sequence   
>XM_004857149.1
ATGGCTGGCCAGCTGAGCGAGGGAGCCATTGCGGCCATAATGCAACAGGGGGATACATCGATAAAACCTATTCTCCAAGTCATTAGCATCCGCCCCATTACTACAGGGAATAGTCCACCCCGATATCGACTGCTTATGAGTGATGGAATAAACACTCTATCCTCTTTCATGTTAGCAACACAGATGAACTCTCTGGTTGAGGAAGAACGATTGGCTAGCAACTGTATTTGCCAGATTCAACGATTCATTGTTAACACTCTGAAAGATGGAAGGAGAGTGGTTATTTTGATGGAATTACAAGTTTTGAAATCTGCTGAAATAGTTGGAATGAAGATTGGCAATCCATTGCCCTATAACGAAGGACAGGGGCAGCCACAAGCAGCCCCTTCTCCGGCCACAGCAGCCAGTCCATCAGTCAGCAAGCCTCAGCAGCAGAATGGGAGCTCAGGAGCTGGTTCCTCTGTACCCAAGGCTTATGGTGCCTCAAAGACGTTCGGAAAACCTGGAGGGACCGGCCTGTTACACCCTTCTGGGGGGACACAGTCCAAAGTGGTACCCATCGTCAGCCTCACTCCATACCAGTCCAAGTGGACTGTTTGTGCTCGTGTTACCAACAAAAGTCAGATCCGTACCTGGAGCAATTCTCGAGGGGAAGGGAAGCTTTTCTCTCTAGAACTAGTGGATGAAAGTGGTGAAATCAGAGCTACTGCTTTCAATGAGCAAGTGGACAAGTTCTTCCCCCTCATTGAAGTGAACAAGGTGTATTATTTCTCAAAAGGCACCCTGAAGATTGCTAACAAACAGTTCACAGCTGTTAAAAACGACTATGAGATGACCTTCAATAATGAGACTTCTGTCGTGCCCTGTGAAGATGATCATCATTTACCTACAGTTCAGTTTGATTTCACAGGAATAGGTGATCTGGAGAACAAGTCTAAAGATTCACTTATTGACATAATTGGGATCTGCAAGAGCTATGAAGATGCCACTAAAATCACAGTGAAGTCTAGCAACAGAGAAGTTGCTAAGAGAAATATCTATTTGATGGACATGTCAGGGAAAGTGGTGACTGCTACCCTGTGGGGAGAAGATGCTGACAAATTTGATGGTTCTAGACAGCCTGTGATGGCCATAAAAGGAGCCAGAGTTTCTGATTTTGGTGGACGGACCCTTTCTGTACTGTCTTCAAGCACTATTATCATGAATCCTGACATCCCTGAGGCCTATAAGCTTCGTGGATGGTTTGATGCAGAAGGACAAGCCTTAGATGGTGTTTCCATCTCTGATCTAAAGAGTGGGGGGCTAGGAGCAAGCAACACCAACTGGAAAACTTTATACGAGGTGAAATCAGAGAACCTGGGCCAAGGTGACAAGGCAGACTATTTCAGCTCTGTGGCAACAGTGGTGTATCTTCGCAAAGAGAACTGTATGTACCAGGCCTGCCCAACTCAAGATTGCAATAAAAAAGTGATTGACCAGCAGAATGGATTATACCGCTGTGAAAAGTGTGACCGTGAATTTCCCAATTTCAAATACCGCATGATCTTGTCAGCAAATATTGCAGATTTTCAAGAGAATCAGTGGGTGACTTGTTTCCAGGAATCTGCTGAAGCTATCCTTGGACAAAACACTGCTTATCTTGGGGAACTGAAAGAGAAGAACGAGCAGGCATTTGAAGAAGTTTTCCAGAATGCCAACTTTCGATCTTTCATGTTCAAAATCAGGGTCAAACTGGAGACCTACAATGATGAGTCGCGAATTAAGGCCACGGTGATGGACGTGAAGCCTGTGGACTATAGAGACTACGGCAGAAGGCTGATCATGAACATCAGAAGAAATGCAGTGATGTGA

Related Sequences

XP_004857206.1 Protein

Rpa1 PREDICTED: replication protein A 70 kDa DNA-binding subunit [Heterocephalus glaber]

Length: 616 aa      View alignments
>XP_004857206.1
MAGQLSEGAIAAIMQQGDTSIKPILQVISIRPITTGNSPPRYRLLMSDGINTLSSFMLATQMNSLVEEERLASNCICQIQRFIVNTLKDGRRVVILMELQVLKSAEIVGMKIGNPLPYNEGQGQPQAAPSPATAASPSVSKPQQQNGSSGAGSSVPKAYGASKTFGKPGGTGLLHPSGGTQSKVVPIVSLTPYQSKWTVCARVTNKSQIRTWSNSRGEGKLFSLELVDESGEIRATAFNEQVDKFFPLIEVNKVYYFSKGTLKIANKQFTAVKNDYEMTFNNETSVVPCEDDHHLPTVQFDFTGIGDLENKSKDSLIDIIGICKSYEDATKITVKSSNREVAKRNIYLMDMSGKVVTATLWGEDADKFDGSRQPVMAIKGARVSDFGGRTLSVLSSSTIIMNPDIPEAYKLRGWFDAEGQALDGVSISDLKSGGLGASNTNWKTLYEVKSENLGQGDKADYFSSVATVVYLRKENCMYQACPTQDCNKKVIDQQNGLYRCEKCDREFPNFKYRMILSANIADFQENQWVTCFQESAEAILGQNTAYLGELKEKNEQAFEEVFQNANFRSFMFKIRVKLETYNDESRIKATVMDVKPVDYRDYGRRLIMNIRRNAVM