Sequence details NCBI ID: XM_004857141.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Prpf8
Gene Name pre-mRNA processing factor 8, transcript variant X2
Entrez Gene ID 101724713

Database interlinks

Part of NW_004624786.1 (Scaffold)

For more information consult the page for NW_004624786.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

PRPF8 ENSCPOG00000010379 (Guinea pig)

Gene Details

pre-mRNA processing factor 8

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000009323, Guinea pig)

Protein Percentage 100.0%
CDS Percentage 94.99%
Ka/Ks Ratio 0.001 (Ka = 0.0002, Ks = 0.2253)

PRPF8 ENSG00000174231 (Human)

Gene Details

pre-mRNA processing factor 8

External Links

Gene Match (Ensembl Protein ID: ENSP00000460348, Human)

Protein Percentage 100.0%
CDS Percentage 92.69%
Ka/Ks Ratio 0.001 (Ka = 0.0004, Ks = 0.3741)

Prpf8 ENSMUSG00000020850 (Mouse)

Gene Details

pre-mRNA processing factor 8

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000018449, Mouse)

Protein Percentage 99.91%
CDS Percentage 91.15%
Ka/Ks Ratio 0.001 (Ka = 0.0005, Ks = 0.4796)

Prpf8 ENSRNOG00000003495 (Rat)

Gene Details

pre-mRNA processing factor 8 (Prpf8), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000005016, Rat)

Protein Percentage 99.91%
CDS Percentage 91.06%
Ka/Ks Ratio 0.001 (Ka = 0.0005, Ks = 0.4753)

Genome Location

Sequence Coding sequence

Length: 7008 bp    Location: 4392581..4356481   Strand: -
Raw sequence   
>XM_004857141.1
ATGGCCGGAGTATTTCCATACCGAGGGCCGGGTAACCCGGTGCCCGGCCCTCTAGCCCCGCTGCCGGACTACATGTCGGAGGAGAAGCTGCAAGAAAAAGCCCGAAAATGGCAGCAATTGCAGGCCAAGCGCTATGCAGAAAAACGGAAGTTTGGATTTGTGGATGCTCAGAAGGAAGACATGCCTCCAGAACATGTCAGGAAGATAATAAGAGACCATGGAGACATGACCAACAGGAAGTTTCGCCATGACAAAAGGGTCTATTTGGGTGCCCTAAAGTACATGCCCCATGCAGTCCTCAAGCTTCTGGAGAACATGCCTATGCCTTGGGAGCAGATTCGGGATGTGCCTGTTCTGTACCACATCACTGGAGCCATTTCCTTCGTCAATGAGATTCCCTGGGTCATTGAGCCAGTCTACATCTCCCAGTGGGGGTCAATGTGGATTATGATGCGTAGAGAAAAAAGAGATAGGAGGCATTTCAAAAGGATGCGATTCCCCCCTTTTGATGATGAGGAACCGCCCTTGGACTATGCTGACAACATCCTAGATGTTGAGCCACTGGAAGCCATTCAGCTAGAGCTGGATCCCGAGGAGGATGCTCCTGTATTGGACTGGTTCTATGACCACCAGCCACTGAGAGACAGCAGGAAATACGTTAATGGCTCCACTTACCAGCGCTGGCAGTTCACATTGCCTATGATGTCCACTCTCTACCGCTTAGCCAATCAACTCCTGACAGACTTAGTGGATGACAACTATTTCTATCTGTTTGACCTAAAGGCCTTCTTTACCTCTAAGGCACTCAATATGGCCATTCCTGGAGGCCCCAAATTTGAACCTCTTGTTCGAGACATCAACCTACAGGATGAAGACTGGAATGAATTCAACGATATTAACAAGATCATCATCCGGCAGCCTATCCGCACTGAGTACAAGATTGCTTTTCCTTATTTATACAACAACCTTCCACACCATGTCCACCTCACTTGGTACCACACTCCCAATGTTGTGTTCATCAAAACTGAGGATCCCGATTTGCCCGCTTTCTACTTTGATCCTTTGATTAACCCAATTTCCCATAGGCACTCAGTCAAGAGCCAGGAGCCATTGCCTGATGACGATGAGGAATTTGAGCTCCCAGAGTTTGTGGAGCCCTTCCTGAAGGACACACCCCTCTACACAGACAACACAGCCAATGGCATTGCCCTGCTCTGGGCCCCACGGCCCTTCAACTTACGCTCTGGTCGCACCCGCAGGGCCCTGGATATACCCCTTGTCAAGAACTGGTACCGGGAGCATTGTCCTGCTGGGCAGCCTGTGAAAGTGAGAGTCTCCTACCAGAAGCTGCTTAAGTACTATGTGCTGAATGCTCTGAAGCATCGGCCCCCTAAGGCCCAGAAGAAGAGGTATCTCTTCCGCTCTTTTAAAGCTACCAAATTCTTTCAGTCCACAAAACTGGACTGGGTGGAAGTGGGACTACAAGTTTGCCGTCAGGGATACAACATGCTCAACCTTCTTATCCACCGTAAAAACCTCAACTACCTGCACCTGGACTACAACTTCAACCTCAAGCCTGTGAAGACCCTTACCACCAAGGAAAGAAAGAAATCTCGTTTTGGGAATGCTTTCCATCTGTGTCGAGAAGTACTGCGTTTAACAAAGCTGGTTGTGGACAGTCATGTTCAGTATCGATTGGGCAATGTGGATGCCTTCCAGTTGGCAGATGGATTGCAGTATATATTTGCCCATGTGGGCCAGCTAACTGGGATGTATCGATACAAATACAAGCTGATGCGACAGATCCGCATGTGCAAGGACTTGAAGCATCTCATCTATTACCGCTTCAATACGGGCCCTGTGGGGAAAGGCCCTGGCTGTGGCTTCTGGGCTGCTGGCTGGCGGGTCTGGCTGTTTTTCATGCGTGGCATTACCCCTTTGCTGGAGCGATGGCTGGGCAACCTTCTGGCCCGGCAGTTTGAAGGCCGACACTCGAAAGGGGTGGCAAAAACTGTAACAAAGCAGCGCGTGGAGTCCCATTTTGACCTTGAGCTTCGGGCAGCTGTAATGCATGACATTCTGGACATGATGCCTGAGGGGATCAAACAGAACAAGGCCCGAACAATATTGCAGCACCTCAGTGAAGCCTGGCGCTGCTGGAAGGCCAACATTCCCTGGAAGGTCCCAGGACTACCAACACCCATAGAGAATATGATCCTTCGATACGTGAAGGCCAAAGCTGACTGGTGGACCAACACTGCCCACTACAACCGAGAACGGATCCGCCGAGGGGCCACCGTGGACAAGACTGTTTGCAAAAAGAACTTGGGCCGCCTCACTAGGCTGTACTTGAAGGCAGAACAGGAGCGGCAGCACAATTACCTGAAGGATGGGCCTTACATCACAGCAGAGGAAGCAGTGGCAGTATATACCACCACTGTGCATTGGTTGGAAAGCCGTAGATTCTCACCCATCCCGTTCCCCCCACTGTCTTACAAGCATGACACCAAGTTGCTTATCTTGGCTTTGGAGCGACTCAAGGAAGCTTATAGTGTGAAATCTCGGTTAAACCAGTCTCAGAGGGAGGAGCTAGGTCTGATCGAGCAAGCCTATGACAACCCGCATGAGGCATTGTCCCGAATCAAGCGTCACCTCCTCACACAGAGAGCCTTTAAGGAAGTGGGCATTGAGTTCATGGATCTCTATAGCCACCTGGTGCCAGTATATGATGTGGAACCACTGGAGAAGATAACTGATGCATACCTAGACCAGTACCTGTGGTACGAAGCAGACAAGCGCCGCCTTTTCCCACCCTGGATCAAGCCTGCTGACACAGAACCACCTCCACTGCTTGTTTACAAGTGGTGCCAAGGCATCAATAACCTTCAGGATGTGTGGGAGACCAGTGAGGGCGAGTGCAATGTTATGCTGGAATCTCGTTTTGAGAAGATGTATGAAAAGATTGACTTAACCCTGCTGAATAGGTTGCTGCGACTTATCGTGGACCACAACATAGCTGACTACATGACGGCCAAGAACAATGTTGTCATCAACTATAAGGACATGAACCACACAAATTCATATGGGATCATCAGAGGCCTACAGTTTGCCTCATTCATCGTGCAGTACTATGGCTTGGTGATGGATTTGCTGGTGTTGGGATTGCACCGGGCCAGTGAGATGGCAGGGCCCCCTCAGATGCCAAATGACTTTCTCAGTTTCCAGGACATAGCCACTGAGGCTGCCCACCCCATCCGACTCTTTTGTAGATACATTGACCGCATCCATATTTTCTTCAGGTTCACAGCAGATGAGGCTCGAGACCTGATCCAGCGCTACCTGACAGAGCATCCTGACCCCAACAATGAAAACATCGTTGGCTATAATAACAAGAAGTGTTGGCCCCGAGACGCCCGCATGCGCCTCATGAAGCATGATGTCAACTTGGGTCGGGCAGTTTTCTGGGACATCAAGAACCGTCTCCCACGATCAGTGACAACAGTTCAGTGGGAGAACAGCTTTGTGTCTGTGTATAGTAAGGACAACCCCAACTTGCTGTTCAACATGTGTGGCTTTGAATGCCGCATCCTGCCTAAATGCCGCACCAGCTATGAGGAGTTCACCCATAAGGATGGGGTCTGGAACCTGCAGAATGAGGTTACAAAGGAGCGGACAGCTCAGTGTTTCCTACGTGTGGATGATGAATCAATGCAGCGCTTCCACAACCGTGTGCGTCAAATTCTGATGGCCTCTGGCTCCACCACTTTCACCAAGATTGTGAATAAGTGGAATACAGCTCTAATTGGCCTTATGACATACTTTCGGGAGGCTGTGGTGAATACCCAGGAACTCTTGGACTTACTAGTAAAGTGTGAGAACAAGATCCAGACACGTATCAAGATTGGACTCAACTCCAAGATGCCAAGTCGGTTCCCCCCTGTTGTGTTCTACACCCCAAAGGAGTTAGGTGGACTCGGCATGCTCTCAATGGGCCATGTGCTCATCCCCCAGTCTGACCTCAGGTGGTCTAAGCAGACTGATGTTGGTATCACACATTTTCGCTCAGGAATGAGCCATGAAGAAGACCAACTGATTCCCAACTTGTACCGCTACATACAGCCATGGGAGAGTGAGTTCATTGATTCTCAGCGGGTCTGGGCTGAGTATGCGCTCAAGAGACAAGAGGCCATTGCTCAGAACAGACGGCTAACTTTAGAAGATCTAGAAGACTCATGGGATCGTGGCATTCCTCGAATCAATACCCTCTTCCAAAAGGACCGGCACACATTGGCTTATGATAAGGGCTGGCGTGTCCGAACTGACTTTAAGCAGTACCAAGTTTTGAAGCAGAACCCTTTCTGGTGGACACACCAGCGGCATGATGGGAAGCTCTGGAATCTAAACAACTACCGTACAGATATGATCCAGGCTCTGGGTGGTGTGGAAGGCATTCTGGAACACACACTCTTCAAGGGCACTTACTTCCCTACCTGGGAGGGTCTTTTCTGGGAGAAGGCCAGTGGCTTTGAAGAGTCTATGAAGTGGAAAAAGCTAACTAACGCTCAGCGATCAGGTTTGAACCAGATTCCCAATCGTAGATTCACCCTCTGGTGGTCCCCAACCATCAATCGAGCCAATGTATATGTGGGCTTTCAGGTACAGCTGGACCTGACAGGTATCTTCATGCATGGCAAGATCCCCACACTGAAGATCTCTCTCATCCAGATCTTCCGAGCTCACTTGTGGCAGAAGATCCACGAGAGCATCGTTATGGACTTGTGTCAGGTGTTCGACCAGGAACTAGATGCATTGGAAATTGAGACAGTACAAAAGGAGACAATCCATCCTAGGAAGTCCTATAAGATGAATTCTTCCTGTGCAGACATACTGCTCTTTGCCTCCTATAAGTGGAATGTTTCCCGGCCTTCATTGCTGGCAGACTCCAAGGATGTGATGGACAGCACCACCACTCAGAAGTATTGGATTGACATCCAGTTGCGCTGGGGAGACTATGATTCCCATGACATTGAGCGCTATGCCCGGGCCAAATTCCTGGACTACACCACAGACAACATGAGTATCTACCCTTCACCCACAGGTGTGCTCATTGCCATTGACCTGGCCTATAACCTGCACAGTGCCTATGGAAACTGGTTCCCAGGCAGCAAGCCTCTCATACAACAGGCCATGGCCAAGATCATGAAGGCAAATCCTGCCTTGTATGTGTTACGTGAACGAATCCGGAAGGGGCTTCAGCTCTATTCATCTGAGCCCACTGAGCCTTACCTGTCCTCTCAGAACTATGGTGAGCTCTTCTCCAATCAGATCATCTGGTTTGTGGATGACACTAATGTCTACAGAGTGACTATCCACAAGACCTTTGAAGGGAACTTGACAACAAAGCCTATCAACGGGGCCATCTTTATCTTCAACCCACGAACAGGGCAGCTCTTCCTCAAGATAATCCACACATCTGTGTGGGCTGGACAGAAGCGTTTGGGCCAGCTGGCCAAATGGAAGACAGCTGAGGAAGTGGCTGCCCTGATTCGATCTCTGCCTGTGGAGGAGCAGCCCAAGCAGATCATTGTCACCAGAAAGGGCATGCTGGATCCTTTGGAGGTACACTTACTGGACTTCCCCAACATCGTGATCAAAGGATCGGAGCTCCAACTTCCCTTCCAGGCTTGTCTCAAGGTGGAAAAGTTTGGGGATCTTATCCTTAAAGCCACTGAGCCTCAGATGGTTCTCTTCAACCTCTATGATGACTGGCTCAAGACTATCTCATCCTACACGGCTTTCTCCCGTCTCATCCTGATTCTGCGTGCCCTACATGTGAACAATGACCGGGCGAAGGTGATCCTGAAGCCAGACAAGACTACTATTACAGAACCCCACCACATCTGGCCCACCCTGACAGATGAGGAGTGGATCAAGGTGGAGGTGCAGCTCAAGGATCTGATCTTGGCTGACTACGGCAAGAAAAACAATGTGAACGTAGCATCACTGACACAATCAGAAATTAGAGACATCATCCTGGGAATGGAGATATCAGCACCGTCACAGCAGCGGCAGCAGATAGCCGAGATTGAGAAGCAGACCAAGGAACAGTCCCAGCTGACTGCAACACAGACTCGCACTGTCAACAAACATGGTGATGAGATCATTACCTCCACCACCAGTAACTATGAGACCCAGACTTTCTCATCAAAGACTGAATGGAGGGTCAGGGCCATATCTGCTGCCAACCTGCACCTTCGGACCAATCACATTTATGTTTCATCTGATGACATTAAGGAGACTGGTTATACCTATATCCTTCCCAAGAATGTGCTTAAGAAATTTATCTGCATATCTGACCTTCGTGCCCAAATTGCAGGATACCTGTATGGGGTGAGCCCACCAGATAACCCCCAGGTGAAGGAAATCCGCTGCATTGTGATGGTGCCTCAGTGGGGCACCCACCAGACTGTGCATCTGCCTGGCCAGCTGCCTCAGCATGAGTACCTCAAGGAGATGGAGCCCTTAGGTTGGATCCACACTCAGCCCAATGAGTCCCCCCAGCTGTCCCCCCAGGATGTCACAACCCACGCCAAGATCATGGCTGACAACCCATCTTGGGATGGTGAGAAGACCATTATCATCACTTGCAGCTTCACCCCAGGCTCCTGCACGCTGACAGCCTACAAGCTTACCCCCAGTGGTTATGAATGGGGCCGCCAGAACACAGACAAAGGTAACAACCCCAAGGGTTACCTCCCCTCACACTATGAGAGGGTCCAGATGCTGCTGTCAGACCGCTTCCTCGGCTTCTTCATGGTCCCTGCTCAGTCCTCGTGGAACTACAACTTCATGGGTGTCCGGCATGATCCCAATATGAAGTATGAATTGCAGCTGGCAAACCCCAAGGAGTTCTACCATGAAGTTCACAGACCCTCCCACTTTCTCAACTTTGCTCTCCTGCAAGAGGGCGAGGTCTACTCTGCAGACCGAGAGGACCTCTATGCCTAG

Related Sequences

XP_004857198.1 Protein

Prpf8 PREDICTED: pre-mRNA-processing-splicing factor 8 isoform X2 [Heterocephalus glaber]

Length: 2335 aa      View alignments
>XP_004857198.1
MAGVFPYRGPGNPVPGPLAPLPDYMSEEKLQEKARKWQQLQAKRYAEKRKFGFVDAQKEDMPPEHVRKIIRDHGDMTNRKFRHDKRVYLGALKYMPHAVLKLLENMPMPWEQIRDVPVLYHITGAISFVNEIPWVIEPVYISQWGSMWIMMRREKRDRRHFKRMRFPPFDDEEPPLDYADNILDVEPLEAIQLELDPEEDAPVLDWFYDHQPLRDSRKYVNGSTYQRWQFTLPMMSTLYRLANQLLTDLVDDNYFYLFDLKAFFTSKALNMAIPGGPKFEPLVRDINLQDEDWNEFNDINKIIIRQPIRTEYKIAFPYLYNNLPHHVHLTWYHTPNVVFIKTEDPDLPAFYFDPLINPISHRHSVKSQEPLPDDDEEFELPEFVEPFLKDTPLYTDNTANGIALLWAPRPFNLRSGRTRRALDIPLVKNWYREHCPAGQPVKVRVSYQKLLKYYVLNALKHRPPKAQKKRYLFRSFKATKFFQSTKLDWVEVGLQVCRQGYNMLNLLIHRKNLNYLHLDYNFNLKPVKTLTTKERKKSRFGNAFHLCREVLRLTKLVVDSHVQYRLGNVDAFQLADGLQYIFAHVGQLTGMYRYKYKLMRQIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAAGWRVWLFFMRGITPLLERWLGNLLARQFEGRHSKGVAKTVTKQRVESHFDLELRAAVMHDILDMMPEGIKQNKARTILQHLSEAWRCWKANIPWKVPGLPTPIENMILRYVKAKADWWTNTAHYNRERIRRGATVDKTVCKKNLGRLTRLYLKAEQERQHNYLKDGPYITAEEAVAVYTTTVHWLESRRFSPIPFPPLSYKHDTKLLILALERLKEAYSVKSRLNQSQREELGLIEQAYDNPHEALSRIKRHLLTQRAFKEVGIEFMDLYSHLVPVYDVEPLEKITDAYLDQYLWYEADKRRLFPPWIKPADTEPPPLLVYKWCQGINNLQDVWETSEGECNVMLESRFEKMYEKIDLTLLNRLLRLIVDHNIADYMTAKNNVVINYKDMNHTNSYGIIRGLQFASFIVQYYGLVMDLLVLGLHRASEMAGPPQMPNDFLSFQDIATEAAHPIRLFCRYIDRIHIFFRFTADEARDLIQRYLTEHPDPNNENIVGYNNKKCWPRDARMRLMKHDVNLGRAVFWDIKNRLPRSVTTVQWENSFVSVYSKDNPNLLFNMCGFECRILPKCRTSYEEFTHKDGVWNLQNEVTKERTAQCFLRVDDESMQRFHNRVRQILMASGSTTFTKIVNKWNTALIGLMTYFREAVVNTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPKELGGLGMLSMGHVLIPQSDLRWSKQTDVGITHFRSGMSHEEDQLIPNLYRYIQPWESEFIDSQRVWAEYALKRQEAIAQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRVRTDFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILEHTLFKGTYFPTWEGLFWEKASGFEESMKWKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGIFMHGKIPTLKISLIQIFRAHLWQKIHESIVMDLCQVFDQELDALEIETVQKETIHPRKSYKMNSSCADILLFASYKWNVSRPSLLADSKDVMDSTTTQKYWIDIQLRWGDYDSHDIERYARAKFLDYTTDNMSIYPSPTGVLIAIDLAYNLHSAYGNWFPGSKPLIQQAMAKIMKANPALYVLRERIRKGLQLYSSEPTEPYLSSQNYGELFSNQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLAKWKTAEEVAALIRSLPVEEQPKQIIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACLKVEKFGDLILKATEPQMVLFNLYDDWLKTISSYTAFSRLILILRALHVNNDRAKVILKPDKTTITEPHHIWPTLTDEEWIKVEVQLKDLILADYGKKNNVNVASLTQSEIRDIILGMEISAPSQQRQQIAEIEKQTKEQSQLTATQTRTVNKHGDEIITSTTSNYETQTFSSKTEWRVRAISAANLHLRTNHIYVSSDDIKETGYTYILPKNVLKKFICISDLRAQIAGYLYGVSPPDNPQVKEIRCIVMVPQWGTHQTVHLPGQLPQHEYLKEMEPLGWIHTQPNESPQLSPQDVTTHAKIMADNPSWDGEKTIIITCSFTPGSCTLTAYKLTPSGYEWGRQNTDKGNNPKGYLPSHYERVQMLLSDRFLGFFMVPAQSSWNYNFMGVRHDPNMKYELQLANPKEFYHEVHRPSHFLNFALLQEGEVYSADREDLYA