Sequence details NCBI ID: XM_004857138.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Scarf1
Gene Name scavenger receptor class F, member 1, transcript variant X1
Entrez Gene ID 101724126

Database interlinks

Part of NW_004624786.1 (Scaffold)

For more information consult the page for NW_004624786.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

SCARF1 ENSCPOG00000010362 (Guinea pig)

Gene Details

scavenger receptor class F, member 1

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000009308, Guinea pig)

Protein Percentage 78.53%
CDS Percentage 85.12%
Ka/Ks Ratio 0.43578 (Ka = 0.1326, Ks = 0.3042)

SCARF1 ENSG00000074660 (Human)

Gene Details

scavenger receptor class F, member 1

External Links

Gene Match (Ensembl Protein ID: ENSP00000263071, Human)

Protein Percentage 68.72%
CDS Percentage 76.68%
Ka/Ks Ratio 0.3121 (Ka = 0.2123, Ks = 0.6802)

Scarf1 ENSMUSG00000038188 (Mouse)

Gene Details

scavenger receptor class F, member 1

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000044248, Mouse)

Protein Percentage 68.08%
CDS Percentage 75.48%
Ka/Ks Ratio 0.29943 (Ka = 0.2167, Ks = 0.7237)

Scarf1 ENSRNOG00000037268 (Rat)

Gene Details

scavenger receptor class F, member 1 (Scarf1), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000053177, Rat)

Protein Percentage 66.58%
CDS Percentage 73.76%
Ka/Ks Ratio 0.2919 (Ka = 0.2335, Ks = 0.7999)

Genome Location

Sequence Coding sequence

Length: 2454 bp    Location: 4352141..4338244   Strand: -
Raw sequence   
>XM_004857138.1
ATGGGGCTGGAGCTGCTGCTCCCACTGCTGCTGCTCTGGACTCAGAAGACCCAAGAGTCCGAGCTAGACCCCGAAGGGCTGGACCCAGAAGGCCAGAACGTCTGCAAGAGCAGCAGCCCCCTTGCAGAGCTCCTGTGCTGTCCAGGCTGGAGGCAGAAAGATCAAGAATGCACCATCCCCATCTGTGAGGGGCCGGACGCCTGTAGGAAAGACGAGGTATGTGTGAAACCAGGCCTCTGTCGGTGCAAACCTGGATTCTTCGGGGCCCAGTGCAGCTCCCCCTGCCCGGACCAGTACTGGGGCCCCGACTGCCGTGAGATCTGCTCCTGCCACCCACATGGCAAGTGTGACCCGGTCACAGGTGTGTGCCGGTGCCAAGCTGACCGGTGGGGCAGCAACTGTGAGTTCCAGTGCTCCTGCGGGACCCACGGACGTTGCGACCCCAAGACTGGCCTGTGCCACTGTGACCCGGGCTGGTGGTCGGACACATGTCGCCGCCGATGCAGGTGCAACCCTTTGGCACAGTGTGACGCGACCACGGGCACCTGCCTGTGTCCATCAGGCTGGTGGGGCGAGCGCTGCAACTTCAGGTGCTCCTGCCACAAGTCACCTTGCACACCAGACACAGGCCGCTGCAAATGCCTGCCTGGGTGGTGGGGGACTGACTGCAGGCAGCCATGCAGCTGCATCTATGGCTCCTGCCACGGCACTTCTGGCCAGTGCATTTGCAAGCTTGGCTTCCAGGGCACAAACTGCGATCTGCCCTGCACCCCTGGCTACTATGGGTTGCATTGCTTCCAAAGATGCGGCCACTGCAAGCAGAGTGCACCGTGCTCTAAGGACTTAGGCTTCTGTGAGTCCTGTGAGCCGGGATGGAATGGGACCCTGTGCCAGGTGCCTTGCTCACCAGGCACCTTTGGCGAGACCTGCAGCCAACAGTGCCCCCACTGCCGGGGTGGGGAGCCCTGTCAGGTAGAAACAGGACACTGTGAGCACTGTGACCCTGGCAGGATGGGGCCCAGATGTGAAGACAGCTGCCCAGTTGGCACCTTTGGAGAGGACTGCAGCTCTATCTGTCCCACCTGTGTCCAGGGGGCCTGTGATCCCCAGACTGGAGAATGTGTCTGTAGCGCTGGCTACTGGGGGACCAGCTGCAACAGTTCCTGCCTGCCTGGCTTCTATGGCAACAACTGCTCCCTGCCCTGCCAGTGCTCAGATGGACTTTGCAGCCCTGTGTCTGGGGCCTGCCACTGGGGCCATCTCAGTAAGGAAGTTGCTCTCATTGCTGGCAGCCTTGTGCTTCTGCTGCTGCTCCTCCTGGGCATTGCCTGCTACTGCTGGGCCACTCGGCTGGACCCCAAGGACAGGCCTTCAAGGGGTGGAACCACCTTGTCCAGGATGAAGCAGCGGGTCTGTGGGGCACTGAGCAGCCTGGGCTCTGCACTGCTGTGTGGCTCCCTCAGTGGCTACAAGCTTCCCTGGGTGACAGTGTCTCACCACGACCCGGAAGTCCCCTTCAACCACAGCTTCATTGAGCAGCCCTCTGCCGGCTGGGCTTCTGAGGACTCCTTCTCTTCTGATTCTGAATCCGGAGCAGAGAACGAAGATTCTGCCTACTGCGTGTCATCCCCAAAAGGGACGGTTCCTGTGGCCCAGGCAGAGTCATTGGAGGCCACCTTCCCTCCCCCTGAGGATGCCTCCACGCCATTCCCTATCCCACGAACCTCCAGCTTAGCCCGGGCCAAGCGGCCCTCCGTCTCCTTTGCTGAAGGCACCAAGTTTGTGTCGCAGAGTTGCCGAAGCTCAGGGGAGCTCTCCAGTCCAATCCGAAAACCCAAGAGGCTCTCAAGAGGAGCCCAAGCAGGTCCTGAGAGCCAGGAGACTGAGGAGTCCACAAGCATGGAACAAGCACAGGTGGATAAGGCCCCTCCTGCTGCTGCCAGACCCAGCAATTCTGCCAATGGCCACCGATTCCCGCTTGATAACCAGAGAGTGGCAGAGCATGGGGAAACCACCAAGGACAACGTCCAGAAGAGCTCTGATTCTGTGGCTACAATCTACATGCTGGCAGGGATGCCCGAGAGATCTGAGGGCCCTGTCTGGTCTGTCTTCCGCCGTTTGGGTAACTTCCAGAAAGGCCAGGCAGAAGCCAAGGTCAAGAGTGCCATCCCTAAGCCTCCACGCCGAGCTCTGGCTCAGAAGGGCAGCACTACACCATCCCCTGGCTCTGCCAATCAAAGCCCTGGCTTGGCTCCTAGTCTTGTAGGGGCTGCAGAATCTAGAGGAGTTAGGCAGGAGGAGGTGTCCAGGGTGCTGGGGGATGGCAGTGAGAACCCGGGAGGCACCTGGGAGCCGGTCTCCAGGAACAGCCTCCCAGAACATGCTCCCCAGAAGCAAGCTGAAGAGGAAGGGGCAGAGGAGCCCCTGTATGAGAATGTGCGTGTACCTGGGTAA

Related Sequences

XP_004857195.1 Protein

Scarf1 PREDICTED: scavenger receptor class F member 1 isoform X1 [Heterocephalus glaber]

Length: 817 aa      View alignments
>XP_004857195.1
MGLELLLPLLLLWTQKTQESELDPEGLDPEGQNVCKSSSPLAELLCCPGWRQKDQECTIPICEGPDACRKDEVCVKPGLCRCKPGFFGAQCSSPCPDQYWGPDCREICSCHPHGKCDPVTGVCRCQADRWGSNCEFQCSCGTHGRCDPKTGLCHCDPGWWSDTCRRRCRCNPLAQCDATTGTCLCPSGWWGERCNFRCSCHKSPCTPDTGRCKCLPGWWGTDCRQPCSCIYGSCHGTSGQCICKLGFQGTNCDLPCTPGYYGLHCFQRCGHCKQSAPCSKDLGFCESCEPGWNGTLCQVPCSPGTFGETCSQQCPHCRGGEPCQVETGHCEHCDPGRMGPRCEDSCPVGTFGEDCSSICPTCVQGACDPQTGECVCSAGYWGTSCNSSCLPGFYGNNCSLPCQCSDGLCSPVSGACHWGHLSKEVALIAGSLVLLLLLLLGIACYCWATRLDPKDRPSRGGTTLSRMKQRVCGALSSLGSALLCGSLSGYKLPWVTVSHHDPEVPFNHSFIEQPSAGWASEDSFSSDSESGAENEDSAYCVSSPKGTVPVAQAESLEATFPPPEDASTPFPIPRTSSLARAKRPSVSFAEGTKFVSQSCRSSGELSSPIRKPKRLSRGAQAGPESQETEESTSMEQAQVDKAPPAAARPSNSANGHRFPLDNQRVAEHGETTKDNVQKSSDSVATIYMLAGMPERSEGPVWSVFRRLGNFQKGQAEAKVKSAIPKPPRRALAQKGSTTPSPGSANQSPGLAPSLVGAAESRGVRQEEVSRVLGDGSENPGGTWEPVSRNSLPEHAPQKQAEEEGAEEPLYENVRVPG