Sequence details NCBI ID: XM_004857106.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Vps53
Gene Name vacuolar protein sorting 53 homolog (S. cerevisiae), transcript variant X1
Entrez Gene ID 101714565

Database interlinks

Part of NW_004624786.1 (Scaffold)

For more information consult the page for NW_004624786.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

VPS53 ENSCPOG00000009355 (Guinea pig)

Gene Details

vacuolar protein sorting 53 homolog (S. cerevisiae)

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000008397, Guinea pig)

Protein Percentage 98.19%
CDS Percentage 94.71%
Ka/Ks Ratio 0.04207 (Ka = 0.0085, Ks = 0.2011)

VPS53 ENSG00000141252 (Human)

Gene Details

vacuolar protein sorting 53 homolog (S. cerevisiae)

External Links

Gene Match (Ensembl Protein ID: ENSP00000401435, Human)

Protein Percentage 97.11%
CDS Percentage 91.74%
Ka/Ks Ratio 0.04137 (Ka = 0.0138, Ks = 0.3345)

Vps53 ENSMUSG00000017288 (Mouse)

Gene Details

vacuolar protein sorting 53 (yeast)

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000061317, Mouse)

Protein Percentage 96.51%
CDS Percentage 90.17%
Ka/Ks Ratio 0.03704 (Ka = 0.0164, Ks = 0.4428)

Vps53 ENSRNOG00000006895 (Rat)

Gene Details

vacuolar protein sorting 53 homolog (S. cerevisiae) (Vps53), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000010010, Rat)

Protein Percentage 96.15%
CDS Percentage 90.37%
Ka/Ks Ratio 0.04464 (Ka = 0.0182, Ks = 0.4089)

Genome Location

Sequence Coding sequence

Length: 2496 bp    Location: 3614811..3775574   Strand: +
Raw sequence   
>XM_004857106.1
ATGGAGGAGGAGGAACTGGAGTTCGTGGAGGAACTGGAAGCCGTGCTGCAGCTCACCCCCGAGGTGCAGCTAGCCATCGAGCAGGTGTTTCCAAGTCAGGATCCTCTAGATCGAGCAGATTTCAATGCTGTTGAGTATATCAATACCCTGTTCCCAACGGAACAATCTCTGGCAAATATAGATGAAGTTGTGAACAAAATTAGACTGAAAATAAGGAGACTGGATGACAATATTAGAACTGTTGTAAGAGGTCAGACAAACGTGGGGCAGGATGGAAGGCAAGCACTTGAAGAGGCCCAGAAAGCTATTCAGCAACTCTTTGGCAAAATCAAAGATATCAAAGACAAAGCAGACAAATCAGAGCAAATGGTTAAGGAAATCACCCGTGACATTAAGCAGCTAGATCATGCCAAACGCCACCTGACCACCTCCATCACAACACTGAACCATCTGCACATGCTAGCAGGTGGCGTCGATTCCCTCGAAGCCATGACCAGGCGCAGACAGTATGGAGAAGTTGCTAATCTCCTTCAGGGTGTAATGAATGTTCTGGAGCACTTCCACAAGTATATAGGAATTCCACAGATCCGGCAGCTTTCTGAAAGAGTGAAGGCTGCACAGTCTGAGTTAGGACAGCAAATCCTGGCAGATTTTGAAGAAGCATTTCCTTCTCAGGGTACCAAGAGGCCAGGCGGACCCAGCAATGTCCTGCGAGATGCATGTCTGGTTGCTAATATTTTGGACCCCAGAATCAAACAGGAAATTATCAAAAAGTTTATTAAACAGCATCTGTCAGAGTATCTAGTACTTTTTCAAGAAAACCAAGATGTTGCCTGGCTGGACAAGATTGACAGACGCTATGCCTGGGTAAAACGCCAGCTTGTGGACTATGAGGAAAAATATGGCCGAATGTTTCCACGTGAGTGGTACATGACTGAGAGGATTGCAGTAGAATTCTGTCATGTGACAAGGGCAGAACTCGCCAAGATCATGCGTGCCAGAGCTAAGGAAATTGAGGTGAAATTGCTTCTTTTTGCTATTCAGAGAACAACTAACTTTGAAGGATTTCTGGCAAAACGTTTCTCCGGCTGCACCCTGACTGATGGAACTCTGAAAAAGCTGGAGTCTCCTCCACCATCCACCAATCCTTTTCTGGAAGATGAGCCAACGCCAGAGATGGAGGAGCTGGCGATGGAGAAGGGAGAGTTAGATCAACCAAAGAAGCCTAAAGCTCCAGACAATCCATTTCATGGCATTGTTTCCAAGTGTTTTGAGCCTCATCTCTATGTGTATATTGAGTCCCAGGACAAAAACCTTGGAGAGCTGATAGATCGGTTTGTGGCTGATTTCAAAGCCCAGGGGCTACCTAAGCCCAACACTGATGAAGGGAGTGCTCTGCTCCCCAGCTGTGCTGACCTTTTTGTTTATTACAAGAAGTGCATGGTGCAATGCTCACAGCTCAGCACTGGGGAGCCAATGATTGCCCTGACCACCATTTTTCAGAAGTACCTCCGAGAATACGCCTGGAAAATCCTCTCTGGCAACCTGCCCAAAACCACCACCAGCAGTGGAGGATTGACCATCAGCAGCCTCCTAAAGGAAAAGGAGGGCTCTGAAGTGGCCAAGTTCACTATTGAGGAGCTCTGCCTCATCTGCAGCATCCTGAGCACAGCAGAGTACTGTCTGGCCACCACGCAGCAGCTAGAAGAAAAACTCAAAGAAAAAGTCGATGTAAGTCTCACAGAACGAATCAATCTCACGGGAGAAATGGACACATTCAGCACTGTCATCTCCAGCAGCATTCAGTTGTTGGTTCAAGACCTGGATGCGGCCTGTGATCCTGCCCTGACTGCCATGAACAAGATGCAGTGGCAGAATGTGGAGCACGTTGGTGACCAGAGCCCCTATGTCACCTCTGTCATTCTTCACATTAAGCAGAATGTCCCCATCATCCATGACAGCCTGGCTTCCACACGGAAATACTTTACTCAGTTCTGCATTAAATTTGCAAACTCTTTCATCCCCAAATTCATCACCCACCTCTTCAAGTGCAAGCCCATCAGTATGGTGGGAGCAGAACAGCTGCTGCTGGATACCCACTCCCTGAAGATGGTCCTGCTTGACCTTCCTTCCATTGGCTCACAGGTGGTGAGGAAGGCACCTGCCAGCTACACTAAAATTGTTGTGAAAGGCATGACCCGGGCTGAAATGATCCTCAAGGTGGTGATGGCCCCTCATGAGCCCTTGGTGGTGTTTGTGGACAACTACATCAAACTCCTTACAGACTGCAACACAGAAACCTTCCAGAAGATACTGGACATGAAGGGGCTGAAGAGGAGTGAGCAGAGCAGCATGCTGGAGCTCCTGCGCCAGAGGCTCCCCACCCCACCCTCAGGGGCAGAAGGTTCCAGCTCCCTGTCCCTGATGGCACCCACCCCAGAACAGGAATCATCTCGAATCCGAAAACTTGAGAAACTAATTAAGAAGAGACTGTAG

Related Sequences

XP_004857163.1 Protein

Vps53 PREDICTED: vacuolar protein sorting-associated protein 53 homolog isoform X1 [Heterocephalus glaber]

Length: 831 aa      View alignments
>XP_004857163.1
MEEEELEFVEELEAVLQLTPEVQLAIEQVFPSQDPLDRADFNAVEYINTLFPTEQSLANIDEVVNKIRLKIRRLDDNIRTVVRGQTNVGQDGRQALEEAQKAIQQLFGKIKDIKDKADKSEQMVKEITRDIKQLDHAKRHLTTSITTLNHLHMLAGGVDSLEAMTRRRQYGEVANLLQGVMNVLEHFHKYIGIPQIRQLSERVKAAQSELGQQILADFEEAFPSQGTKRPGGPSNVLRDACLVANILDPRIKQEIIKKFIKQHLSEYLVLFQENQDVAWLDKIDRRYAWVKRQLVDYEEKYGRMFPREWYMTERIAVEFCHVTRAELAKIMRARAKEIEVKLLLFAIQRTTNFEGFLAKRFSGCTLTDGTLKKLESPPPSTNPFLEDEPTPEMEELAMEKGELDQPKKPKAPDNPFHGIVSKCFEPHLYVYIESQDKNLGELIDRFVADFKAQGLPKPNTDEGSALLPSCADLFVYYKKCMVQCSQLSTGEPMIALTTIFQKYLREYAWKILSGNLPKTTTSSGGLTISSLLKEKEGSEVAKFTIEELCLICSILSTAEYCLATTQQLEEKLKEKVDVSLTERINLTGEMDTFSTVISSSIQLLVQDLDAACDPALTAMNKMQWQNVEHVGDQSPYVTSVILHIKQNVPIIHDSLASTRKYFTQFCIKFANSFIPKFITHLFKCKPISMVGAEQLLLDTHSLKMVLLDLPSIGSQVVRKAPASYTKIVVKGMTRAEMILKVVMAPHEPLVVFVDNYIKLLTDCNTETFQKILDMKGLKRSEQSSMLELLRQRLPTPPSGAEGSSSLSLMAPTPEQESSRIRKLEKLIKKRL