Sequence details NCBI ID: XM_004857034.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Phf12
Gene Name PHD finger protein 12, transcript variant X2
Entrez Gene ID 101721891

Database interlinks

Part of NW_004624786.1 (Scaffold)

For more information consult the page for NW_004624786.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

PHF12 ENSCPOG00000007469 (Guinea pig)

Gene Details

PHD finger protein 12

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000006737, Guinea pig)

Protein Percentage 87.99%
CDS Percentage 88.56%
Ka/Ks Ratio 0.36145 (Ka = 0.0896, Ks = 0.248)

PHF12 ENSG00000109118 (Human)

Gene Details

PHD finger protein 12

External Links

Gene Match (Ensembl Protein ID: ENSP00000329933, Human)

Protein Percentage 96.91%
CDS Percentage 95.09%
Ka/Ks Ratio 0.10355 (Ka = 0.0154, Ks = 0.1489)

Phf12 ENSMUSG00000037791 (Mouse)

Gene Details

PHD finger protein 12

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000044990, Mouse)

Protein Percentage 95.41%
CDS Percentage 94.05%
Ka/Ks Ratio 0.1272 (Ka = 0.0227, Ks = 0.1781)

Phf12 ENSRNOG00000009566 (Rat)

Gene Details

PHD finger protein 12 (Phf12), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000053077, Rat)

Protein Percentage 94.82%
CDS Percentage 93.86%
Ka/Ks Ratio 0.1427 (Ka = 0.0254, Ks = 0.1781)

Genome Location

Sequence Coding sequence

Length: 3015 bp    Location: 1518279..1472105   Strand: -
Raw sequence   
>XM_004857034.1
ATGTGGGAGAAAATGGAGACCAAGACGATCGTGTACGACTTGGACACGTCGGGGGGGCTGATGGAGCAAATCCAAGCTCTGCTGGCTCCCCCCAAGTCGGACGAGGTAGAAAAGCGGAGTCGGAAGCCCGAGAAGGAGCCCCGGAGAAGCGGCAGGGCCACCAACCACGACAGCTGCGATAGCTGCAAGGAAGGTGGAGATCTTCTGTGCTGCGACCATTGCCCGGCCGCCTTCCACCTCCAGTGCTGTAACCCTCCACTGAGTGAAGAGATGTTGCCTCCTGGGGAGTGGATGTGTCACCGGTGCACTGTTCGCCGAAAGAAACGAGATCAGAAAAAGGAGCTGGGCCATGTCAATGGACTGGTGGACAAATCCGGCAAACGGACTACATCCCCCAGCAGTGACAGTGACTTGTTGGACAGATCAGCTAGCAAAACTGAACTCAAGGCCATTGCCCATGCCCGCATCCTGGAAAGGAGAGCCAGCCGGCCTGGCACCCCTACATCCAATGCCAGCACAGAGACCCCTACTTCTGAGCAGAACGACGTTGATGAGGACATCATTGACGTGGACGAGGAGCCAGTAGCAGCAGAGCCGGACTATGTGCAGCCCCAGTTGAGGCGGCCTTTTGAGCTGCTGATTGCCGCCGCCATGGAGCGGAATCCCACCCAATTTCAGTTGCCCAATGAACTGACTTGTACCACTGCACTACCAGGTTCTAGCAAGAGAAGAAGAAAGGAGGAAACCACAGGGAAAAATGTTAAGAAAACACAGCACGAGTTAGATCACAATGGTCTTGTTCCCTTGCCGGTCAAAGTCTGCTTCACGTGTAACAGGAGTTGCCGCGTGGCCCCTCTCATCCAGTGTGACTATTGCCCCCTCCTGTTTCACATGGACTGCCTTGAGCCACCACTCACTGCCATGCCCCTGGGCAGATGGATGTGTCCAAATCACATCGAACATGTGGTGCTGAACCAGAAGAATATGACACTGAGCAATCGGTGCCAGGTGTTTGATCGTTTCCAGGACACCATTTCACAGCATGTAGTCAAAGTGGACTTCCTGAACCGAATCCATAAGAAGTACCCTCCCAACCGCCGAGTGCTCCAGTCAGTCAAAAGAAGAAGCTTAAAGGTTCCCGATGCTATAAAATCTCAGTACCAGTTTCCACCCCCTCTCATTGCACCTGCGGCTATTCGGGATGGGGAGCTGATCTGCAATGGGATCCCCGAGGAATCACGGACGCACCTTTTGAACTCTGAGCACTTAGCCACTCAGGCAGAGCAGCAAGAGTGGCTCTGTAGTGTTGTTGCGCTCCAGTGCAGCATATTGAAACATTTATCTGCTAAGCAGATGTCTTCGCATTGGGACTCTGAACAGACAGAGAAGGCTGATATTAAGCCTGTTATTGTGACTGACAGCTCAATCACCACCTCCCTGCAAACCGCTGACAAGGCACCTACACCTTCCCATTACCCCTTGTCCTGGCCCTCAGGGATTAGCACCCAGAATTCCCTGAGCTGCTCTCCACCTCACCAGCCCCCAGCCCTAGAGGACATCGGCTGCAGTTCTTTTGCGGAAAAATCCAAGAAAACCCCTTGTGGGACTGCCAATGGGCCAGTGAACACAGAGGTGAAAGCCAATGGCCCACACCTCTACAGCAGCCCCACTGATTCCACGGACCCCAGGCGACTTCCAGGTGCCAACAACCCCCTACCGGGCCTCTCACACCGGCAAGGCTGGCCCCGGCCCCTCACGCCACCAGCGGCTGGGGGGCTTCAGAACCACACCGTTGGCATCATTGTGAAGACAGAAAATGCCACTGGCCCCAGCTCTTGCCCCCAGAGGAGTTTGGTTCCTGTCCCAAGCCTGCCCCCTTCCATCCCCAGCTCTTGTGCCAGCATCGAGAACACCAGCACTTTGCAAAGAAAGACTGTCCAATCCCAGATAGGACCTCCGTTGACAGATTCAAGGCCACTGGGCTCACCCCCAAATGCCACCCGGGTGCTCACTCCCCCCCAAACAACAGGAGACAGTGTCCTGGCCACAGGAGCTAACCAACGATTCTGCTCACCAGCGTCATCATCAGATGACAAGGTCAGCCCCGGCACGTTATCCATAGGAAGCGCTTTAACCGTACCCTCTTTCCCAGCCAACTCTACTGCCATGGTGGACCTCACCAACTCACTTCGAGCATTTATGGATGTCAATGGAGAAATCGAAATAAATATGCTGGATGAGAAGCTGATCAAGTTTCTGGCCTTGCAGAGAATACATCAGCTTTTTCCCTCTCGGGTCCAAGCTTCACCAGGCAATATTGGGACACATCCGATGGCTTCTGGAGGGCACCACACAGAAGTGCAAAGAAAGGAGGTACAGGCCCGAGCTGTATTCTACCCTCTTTTAGGGTTGGGAGGAGCTGTGAACATGTGCTATCGAACCCTCTACATCGGGACAGGAGCTGACATGGATGTGTGCCTTACAAACTATGGTCATTGTAACTACGTGTCCGGGAAACATGCCTGCATATTCTATGATGAGAATACCAAACATTATGAGCTGTTAAACTACAGTGAGCATGGGACAACGGTGGACAACGTGCTGTATTCCTGTGACTTCTCTGAGAAGACCCCGCCAACCCCCCCAAGCAGTATTGTTGCCAAAGTGCAGAGCGTCATCAGGCGCTGCCGACATCAGAAACAAGATGAAGAGCCAAGTGAGGAGGCAGCCATGATGAGTTCCCAGGCCCAGGGGCCACAGCGGAGACCCTGCAATTGTAAAGCCAGCAGCTCAAGCTTGATTGGGGGCAGTGGGGCCGGCTGGGAGGGCACAGCCTTATTGCACCATGGCAGCTACATTAAGCTGGGCTGCCTGCAGTTTGTCTTCAGCATCACTGAATTTGCGACCAAACAGCCCAAAGGCGATGCCAGCCTGCTGCAAGATGGGGTCTTGGCCGAGAAGCTCTCTCTCAAGCCTCACCAGGGCCCTGTGCTGCGCTCCAACTCCGTTCCCTAG

Related Sequences

XP_004857091.1 Protein

Phf12 PREDICTED: PHD finger protein 12 isoform X2 [Heterocephalus glaber]

Length: 1004 aa      View alignments
>XP_004857091.1
MWEKMETKTIVYDLDTSGGLMEQIQALLAPPKSDEVEKRSRKPEKEPRRSGRATNHDSCDSCKEGGDLLCCDHCPAAFHLQCCNPPLSEEMLPPGEWMCHRCTVRRKKRDQKKELGHVNGLVDKSGKRTTSPSSDSDLLDRSASKTELKAIAHARILERRASRPGTPTSNASTETPTSEQNDVDEDIIDVDEEPVAAEPDYVQPQLRRPFELLIAAAMERNPTQFQLPNELTCTTALPGSSKRRRKEETTGKNVKKTQHELDHNGLVPLPVKVCFTCNRSCRVAPLIQCDYCPLLFHMDCLEPPLTAMPLGRWMCPNHIEHVVLNQKNMTLSNRCQVFDRFQDTISQHVVKVDFLNRIHKKYPPNRRVLQSVKRRSLKVPDAIKSQYQFPPPLIAPAAIRDGELICNGIPEESRTHLLNSEHLATQAEQQEWLCSVVALQCSILKHLSAKQMSSHWDSEQTEKADIKPVIVTDSSITTSLQTADKAPTPSHYPLSWPSGISTQNSLSCSPPHQPPALEDIGCSSFAEKSKKTPCGTANGPVNTEVKANGPHLYSSPTDSTDPRRLPGANNPLPGLSHRQGWPRPLTPPAAGGLQNHTVGIIVKTENATGPSSCPQRSLVPVPSLPPSIPSSCASIENTSTLQRKTVQSQIGPPLTDSRPLGSPPNATRVLTPPQTTGDSVLATGANQRFCSPASSSDDKVSPGTLSIGSALTVPSFPANSTAMVDLTNSLRAFMDVNGEIEINMLDEKLIKFLALQRIHQLFPSRVQASPGNIGTHPMASGGHHTEVQRKEVQARAVFYPLLGLGGAVNMCYRTLYIGTGADMDVCLTNYGHCNYVSGKHACIFYDENTKHYELLNYSEHGTTVDNVLYSCDFSEKTPPTPPSSIVAKVQSVIRRCRHQKQDEEPSEEAAMMSSQAQGPQRRPCNCKASSSSLIGGSGAGWEGTALLHHGSYIKLGCLQFVFSITEFATKQPKGDASLLQDGVLAEKLSLKPHQGPVLRSNSVP