Sequence details NCBI ID: XM_004856756.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Vps11
Gene Name vacuolar protein sorting 11 homolog (S. cerevisiae), transcript variant X1
Entrez Gene ID 101699973

Database interlinks

Part of NW_004624784.1 (Scaffold)

For more information consult the page for NW_004624784.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

VPS11 ENSCPOG00000006459 (Guinea pig)

Gene Details

vacuolar protein sorting 11 homolog (S. cerevisiae)

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000005817, Guinea pig)

Protein Percentage 97.56%
CDS Percentage 92.74%
Ka/Ks Ratio 0.03771 (Ka = 0.0115, Ks = 0.3058)

VPS11 ENSG00000160695 (Human)

Gene Details

vacuolar protein sorting 11 homolog (S. cerevisiae)

External Links

Gene Match (Ensembl Protein ID: ENSP00000475301, Human)

Protein Percentage 98.09%
CDS Percentage 92.7%
Ka/Ks Ratio 0.02797 (Ka = 0.0096, Ks = 0.3442)

Vps11 ENSMUSG00000032127 (Mouse)

Gene Details

vacuolar protein sorting 11 (yeast)

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000034644, Mouse)

Protein Percentage 97.13%
CDS Percentage 90.54%
Ka/Ks Ratio 0.03028 (Ka = 0.0139, Ks = 0.4596)

Vps11 ENSRNOG00000010733 (Rat)

Gene Details

vacuolar protein sorting 11 homolog (S. cerevisiae) (Vps11), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000061998, Rat)

Protein Percentage 97.95%
CDS Percentage 90.24%
Ka/Ks Ratio 0.02116 (Ka = 0.0107, Ks = 0.5052)

Genome Location

Sequence Coding sequence

Length: 2826 bp    Location: 14452817..14464965   Strand: +
Raw sequence   
>XM_004856756.1
ATGGCGGCCTACCTACAGTGGCGGCGCTTCGTTTTCTTCGACAAAGAGCTCGTGAAGGAGCCACTAGGCAATGATGGGGCCGCTCCTGGGCCTACACCTGCTTCTGGATCCACTGCTTCCAAGTTCCTTTGCCTTCCTTCTGGCATCACCGTCTGCGACTCAGGCCGAGGGAGCCTGGTCTTTGGAGATATGGAAGGCCAAATCTGGTTCTTGCCACGCTCCCTACAGCTCACAGGCTTCCAGGCCTACAAACTAAGAGTGACACACTTATACCAACTGAAGCAGCACAATATTTTGGCATCTGTTGGTGAGGATGAAGAAGGTATCAACCCCCTGGTAAAGATCTGGAACCTGGAGAAGAGAGATGGTGGCAATCCACTCTGCACTCGAATCTTCCCGGCCATCCCAGGAACCGAGCCAACTGTAGTGTCTTGTTTGACTGTCCATGAAAATCTCAACTTTATGGCCATCGGTTTCACAGATGGCAGTGTTAAATTGAACAAAGGAGATATAACCCGGGACCGACATAGCAAGACCCAGATTTTGCACAAGGGCAACTATCCTGTTACTGGACTGGCTTTTCGCCAAGCAGGAAAGACCACACACTTATTTGTTGTGACAACTGAGAATGTCCAGTCCTATATAGTTTCTGGAAAGGATTACCCTCGTGTGGAGTTGGATACCCATGGTTGTGGCCTGCGTTGCTCAGCCCTAAGTGACCCTTCTCAGGACCTGCAGTTCATTGTGGCCGGGGATGAGTGTGTCTACCTCTATCAGCCTGATGAACGTGGGCCCTGCTTCGCCTTTGAGGGCCATAAGCTCATCGCCCACTGGTTTAGAGGCTACCTGGTCATTGTCTCCCATGACCGAAAGGTTTCTCCCAAGTCAGAGTTTACCAGCAGGGACTCACAGAGCTCCGACAAGCAGATTCTCAACATCTATGACCTGTGCAACAAGTTTATAGCCTATAGTGCTGTTTTTGAGGATGTAGTGGATGTGCTTGCTGAGTGGGGGTCCCTGTACGTGCTGACGCGGGATGGGCGGGTCCACGCCCTGCAGGAGAAGGACACACAGACCAAACTGGAGATGCTGTTTAAGAAGAACCTATTTGAGATGGCAATTAACCTGGCCAAGAGCCAACATCTGGATAGTGATGGGCTAGCCCAGATCTTCATGCAGTATGGAGACCATCTCTATAGCAAGGGCAACCATGATGGAGCTGTTCAGCAGTATATCCGAACTATTGGAAAGTTGGAGCCATCCTATGTGATCCGCAAGTTTCTGGATGCCCAGCGTATCCACAACCTGACTGCATACCTGCAGACCCTGCACCGACAGTCCCTGGCCAATGCTGACCATACCACCTTGCTCCTAAACTGCTATACTAAGCTCAAAGACAGCTCAAAGTTGGAGGAATTCATTAAGACAAAGAGTGAGAGTGAAGTCCACTTTGATGTGGAGACAGCCATCAAGGTCCTGCGACAGGCTGGCTACTACTCACATGCACTCTATCTGGCTGAGAACCATGCACATCATGAGTGGTACTTGAAGATCCAGCTTGAGGACATTAAGAATTATCAAGAAGCCCTTCGGTACATTGGCAAACTGCCTTTTGAGCAGGCAGAGAGCAACATGAAGCGCTATGGCAAGATCCTTATGCACCACATACCAGAGCAGACCACACAGTTGCTAAAGGGCCTTTGTACTGACTATCGACCCAACCTGGAAGGCCGAGCTGATAAAGAGGCGCCAGATTGCAGGGCCAATTCTGAGGAGTTCATTCCCATCTTTGCAAACAACCCTCGAGAGCTGAAAGCCTTCCTAGAGCACATGAGTGAAGTGCAGCCAGACTCACCCCAGGGCATTTATGATACACTCCTTGAGCTTCGGCTGCAGAACTGGGCCCATGAGAAAGATCCTCAGGTTAAAGAGAAGCTTCATGCAGAGACCATCTCCCTGCTGAAGAGTGGCCGCTTCTGCGATGTCTTTGACAAGGCACTAGTCCTATGTCAGATGCATGACTTCCAGGATGGAGTCCTTTACCTCTATGAGCAGGGGAAGCTGTTCCAGCAGATCATGCACTACCACATGCAGCACGAGCAGTACCGGCAGGTGATCGCTGTGTGCGAGCGGCACGGAGAACAGGACCCCTCCCTGTGGGAACAGGCCCTAAGCTACTTTGCCCGCAAGGAGGAGGACTGCAAGGAGTATGTGGCTGCTGTGCTTAAGCATATTGAGAACAAGAACCTCATGCCACCCCTTCTAGTGGTGCAGACCCTGGCCCACAACTCTACAGCCACCCTGTCCGTCATCAGAGACTACCTGGTGCAAAAACTGCAGAAACAGAGCCAGCAGATTGCACAGGATGAGCTTCGGGTGCAACGGTACCGAGAGGAGACCACCCATATCCGCCAGGAGATCCAAGAGCTCAAGGCGAGTCCGAAGATTTTCCAGAAGACCAAGTGCAGCATTTGTAATAGTGCCTTGGAGTTGCCCTCGGTCCACTTCCTGTGTGGCCACTCATTCCACCAACACTGTTTTGAGAGTTACTCAGAAAGTGATGCTGACTGCCCCACCTGCCTCCCTGAAAACCGGAAGGTCATGGATATGATCCGGGCTCAGGAACAGAAGCGAGATCTCCATGATCAGTTTCAGCACCAGCTCAAGTGCTCCAATGACAGTTTCTCTGTGATTGCTGACTACTTTGGCCGAGGTGTTTTCAACAAATTGACTCTGCTGACCGACCCTCCCACAGCCAGACTGACTCCCAGCCTAGAGGCTGGGCTGCAACGGGACCTGCTTATGCACTCCAGGAGGGGCACTTAA

Related Sequences

XP_004856813.1 Protein

Vps11 PREDICTED: vacuolar protein sorting-associated protein 11 homolog isoform X1 [Heterocephalus glaber]

Length: 941 aa      View alignments
>XP_004856813.1
MAAYLQWRRFVFFDKELVKEPLGNDGAAPGPTPASGSTASKFLCLPSGITVCDSGRGSLVFGDMEGQIWFLPRSLQLTGFQAYKLRVTHLYQLKQHNILASVGEDEEGINPLVKIWNLEKRDGGNPLCTRIFPAIPGTEPTVVSCLTVHENLNFMAIGFTDGSVKLNKGDITRDRHSKTQILHKGNYPVTGLAFRQAGKTTHLFVVTTENVQSYIVSGKDYPRVELDTHGCGLRCSALSDPSQDLQFIVAGDECVYLYQPDERGPCFAFEGHKLIAHWFRGYLVIVSHDRKVSPKSEFTSRDSQSSDKQILNIYDLCNKFIAYSAVFEDVVDVLAEWGSLYVLTRDGRVHALQEKDTQTKLEMLFKKNLFEMAINLAKSQHLDSDGLAQIFMQYGDHLYSKGNHDGAVQQYIRTIGKLEPSYVIRKFLDAQRIHNLTAYLQTLHRQSLANADHTTLLLNCYTKLKDSSKLEEFIKTKSESEVHFDVETAIKVLRQAGYYSHALYLAENHAHHEWYLKIQLEDIKNYQEALRYIGKLPFEQAESNMKRYGKILMHHIPEQTTQLLKGLCTDYRPNLEGRADKEAPDCRANSEEFIPIFANNPRELKAFLEHMSEVQPDSPQGIYDTLLELRLQNWAHEKDPQVKEKLHAETISLLKSGRFCDVFDKALVLCQMHDFQDGVLYLYEQGKLFQQIMHYHMQHEQYRQVIAVCERHGEQDPSLWEQALSYFARKEEDCKEYVAAVLKHIENKNLMPPLLVVQTLAHNSTATLSVIRDYLVQKLQKQSQQIAQDELRVQRYREETTHIRQEIQELKASPKIFQKTKCSICNSALELPSVHFLCGHSFHQHCFESYSESDADCPTCLPENRKVMDMIRAQEQKRDLHDQFQHQLKCSNDSFSVIADYFGRGVFNKLTLLTDPPTARLTPSLEAGLQRDLLMHSRRGT