Details from NCBI annotation

Gene Symbol Apoc3
Gene Name apolipoprotein C-III
Entrez Gene ID 101725083

This gene is present in the GenAge database and has been identified as potentially important to ageing in humans.

Database interlinks

Part of NW_004624784.1 (Scaffold)

For more information consult the page for NW_004624784.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

APOC3 ENSCPOG00000025900 (Guinea pig)

Gene Details

Cavia porcellus apolipoprotein C-III (Apoc3), mRNA.

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000016494, Guinea pig)

Protein Percentage 62.64%
CDS Percentage 77.66%
Ka/Ks Ratio 0.58195 (Ka = 0.2462, Ks = 0.4231)

APOC3 ENSG00000110245 (Human)

Gene Details

apolipoprotein C-III

External Links

Gene Match (Ensembl Protein ID: ENSP00000227667, Human)

Protein Percentage 67.68%
CDS Percentage 79.12%
Ka/Ks Ratio 0.36946 (Ka = 0.2017, Ks = 0.5461)

Apoc3 ENSMUSG00000032081 (Mouse)

Gene Details

apolipoprotein C-III

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000034586, Mouse)

Protein Percentage 61.62%
CDS Percentage 71.38%
Ka/Ks Ratio 0.34853 (Ka = 0.2898, Ks = 0.8314)

Apoc3 ENSRNOG00000047503 (Rat)

Gene Details

apolipoprotein C-III (Apoc3), transcript variant 1, mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000067045, Rat)

Protein Percentage 56.0%
CDS Percentage 70.67%
Ka/Ks Ratio 0.48038 (Ka = 0.3305, Ks = 0.688)

Genome Location

Sequence Coding sequence

Length: 324 bp    Location: 12244646..12246786   Strand: +
>XM_004856643.1
ATGCAGCCCCGGGTATTCCTCGCTGTGACCCTCCTGGCACTCCTGGCCTCTGCCCGAGCTTTGGAGACCGAGGACGCCTCCCTCCTGGGCTACATGCAGGACTACATGCAGGGCTACATGGAGCACGCCTCCAAGACTGCCCAGGACGCACTGACCAGGGTACAGGACTCTCAGATGGCCCAGCAGGCCAGGGGCTGGATGAGTGACAGTTTAAGCTCCCTGCAAGACTACTGGAGTTCCTTCAAGGGCAAGTGGTCTGGATTCGGGTTCTGGGATGCTACCCCTGAGGAGGCCAGCCCAACCCCGGCCCCTGAGGGCATCTGA

Related Sequences

XP_004856700.1 Protein

Apoc3 PREDICTED: apolipoprotein C-III [Heterocephalus glaber]

Length: 107 aa      View alignments
>XP_004856700.1
MQPRVFLAVTLLALLASARALETEDASLLGYMQDYMQGYMEHASKTAQDALTRVQDSQMAQQARGWMSDSLSSLQDYWSSFKGKWSGFGFWDATPEEASPTPAPEGI