Sequence details NCBI ID: XM_004856425.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Slc13a1
Gene Name solute carrier family 13 (sodium/sulfate symporters), member 1, transcript variant X1
Entrez Gene ID 101701888

This gene is present in the GenAge database and has been identified as potentially important to ageing in humans.

Database interlinks

Part of NW_004624783.1 (Scaffold)

For more information consult the page for NW_004624783.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

SLC13A1 ENSCPOG00000006440 (Guinea pig)

Gene Details

solute carrier family 13 (sodium/sulfate symporter), member 1

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000005803, Guinea pig)

Protein Percentage 79.78%
CDS Percentage 84.76%
Ka/Ks Ratio 0.36393 (Ka = 0.1252, Ks = 0.344)

SLC13A1 ENSG00000081800 (Human)

Gene Details

solute carrier family 13 (sodium/sulfate symporter), member 1

External Links

Gene Match (Ensembl Protein ID: ENSP00000194130, Human)

Protein Percentage 80.0%
CDS Percentage 83.44%
Ka/Ks Ratio 0.28317 (Ka = 0.1232, Ks = 0.4352)

Slc13a1 ENSMUSG00000029700 (Mouse)

Gene Details

solute carrier family 13 (sodium/sulfate symporters), member 1

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000031713, Mouse)

Protein Percentage 80.4%
CDS Percentage 83.04%
Ka/Ks Ratio 0.23467 (Ka = 0.1168, Ks = 0.4975)

Slc13a1 ENSRNOG00000008121 (Rat)

Gene Details

solute carrier family 13 (sodium/sulfate symporter), member 1 (Slc13a1), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000010788, Rat)

Protein Percentage 81.32%
CDS Percentage 83.59%
Ka/Ks Ratio 0.22041 (Ka = 0.1088, Ks = 0.4936)

Genome Location

Sequence Coding sequence

Length: 1413 bp    Location: 12771813..12842285   Strand: +
Raw sequence   
>XM_004856425.1
ATGAAAATTCTCAGTTGTGTCTTAGTTTATCGCCGGCTTCTCCTCATAGTTGTTAGTTTGTTGGGTTTATTACCACTTCCCCTCATCATCCGCACTAAGGAAGCAGAATGTGCCTACGTACTCTTTGTTGTTGCCATATTTTGGGTGACAGAGGCTTTGCCTCTGTCAGTAACAGCTTTGCTGCCAGCATTAATGTTCCCCATGTTTGGGATCCTGCCTTCTACGCATGTGGCATCTACTTATTTCAAAGATTTTCACCTGCTGTTGATTGGAGTTATCTGTTTAGCAACATCAACAGAAAAATGGAATTTGCACAAGAGGATTGCTCTCAGGATGGTGATGATGGTGGGTGTGAACCCAGCATGGCTGACCTTGGGATTCATGAGCACTACTGCCTTCTTATCTATGTGGCTCAGCAACACCTCTACAGCTGCCATGGTGATGCCCATCGTGGAAGCTGTGTCACAGCAGATCATCAGTGCTGAAGCAGAGGTTGAGGCCAATCAGATGACTTATATCAATGAAGCTGCCAACGTCGGCCTGGATATTGATGAAACTTCTATGGGACAAGAAACAAAGGAGAAGAAAGAGAAAACAAAGCCAGTTCCAGGGTACAGTAGTAATACAGGGGACATTTCAACCAAGATGGAGATCCAAAAGTATGTGTTTGTGGTGCATAATACATACACTCATCGTGGGGAATCGGACCCCATCACAGGGAAAAAGTACCGATCGAAGAAGGACCACATGCTGTGCAAACTTATGTGTCTCTGCATTGCTTACTCTTCCACCATTGGTGGCCTGACCACCATCACTGGCACCTCTACCAACTTGATCTTCAACGAGCACTTCAACACACGCTACCCTGATTGTCAATGCCTCAACTTTGGATCGTGGTTTTTGTTTTCCTTCCCGGTTGCTGTTCTTATTCTATTGTTTTCCTGGATATGGCTTCAGTGGCTTTTCCTAGGATTCAATTTTAAGGAGATGTTCAAATGTGGCAAAAGCAAAACAGCTAGAGAAAAAGCTTGTGCTGCAGTGATTATGCAAGAATACCAAAAACTTGGGCCAATGAGGTATCAAGAAACCATGACTTTGGTCCTCTTCATTATAATGGCCCTGCTATGGTTCAGCCGAGATCCAGGATTTGTTCCTGGTTGGTCAGAACTTTTTAGACAGTACTCTGGTTTTGTAACAGATTCAACTGTTGCCTTAATTATAGGACTCCTTTTCTTCCTGATCCCAGCAAAGACGCTGACTAAAACTACATCTACAGGGGAAATTGTTACTTTTGATTACTCTCCACTGATTACTTGGAAAGAATTCCAGTCATTCATGCCCTGGGATATAGCTATTCTTGTTGGCGGAGGGTTTGCTCTGGCAGATGGCTGTGAGGTAATACTCTGTGTGTAG

Related Sequences

XP_004856482.1 Protein

Slc13a1 PREDICTED: solute carrier family 13 member 1 isoform X1 [Heterocephalus glaber]

Length: 470 aa      View alignments
>XP_004856482.1
MKILSCVLVYRRLLLIVVSLLGLLPLPLIIRTKEAECAYVLFVVAIFWVTEALPLSVTALLPALMFPMFGILPSTHVASTYFKDFHLLLIGVICLATSTEKWNLHKRIALRMVMMVGVNPAWLTLGFMSTTAFLSMWLSNTSTAAMVMPIVEAVSQQIISAEAEVEANQMTYINEAANVGLDIDETSMGQETKEKKEKTKPVPGYSSNTGDISTKMEIQKYVFVVHNTYTHRGESDPITGKKYRSKKDHMLCKLMCLCIAYSSTIGGLTTITGTSTNLIFNEHFNTRYPDCQCLNFGSWFLFSFPVAVLILLFSWIWLQWLFLGFNFKEMFKCGKSKTAREKACAAVIMQEYQKLGPMRYQETMTLVLFIIMALLWFSRDPGFVPGWSELFRQYSGFVTDSTVALIIGLLFFLIPAKTLTKTTSTGEIVTFDYSPLITWKEFQSFMPWDIAILVGGGFALADGCEVILCV