Sequence details NCBI ID: XM_004856405.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Snd1
Gene Name staphylococcal nuclease and tudor domain containing 1, transcript variant X2
Entrez Gene ID 101724008

Database interlinks

Part of NW_004624783.1 (Scaffold)

For more information consult the page for NW_004624783.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

SND1 ENSCPOG00000006251 (Guinea pig)

Gene Details

staphylococcal nuclease and tudor domain containing 1

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000005638, Guinea pig)

Protein Percentage 98.13%
CDS Percentage 94.51%
Ka/Ks Ratio 0.04216 (Ka = 0.0088, Ks = 0.208)

SND1 ENSG00000197157 (Human)

Gene Details

staphylococcal nuclease and tudor domain containing 1

External Links

Gene Match (Ensembl Protein ID: ENSP00000346762, Human)

Protein Percentage 97.91%
CDS Percentage 92.67%
Ka/Ks Ratio 0.03232 (Ka = 0.0098, Ks = 0.304)

Snd1 ENSMUSG00000001424 (Mouse)

Gene Details

staphylococcal nuclease and tudor domain containing 1

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000001460, Mouse)

Protein Percentage 97.47%
CDS Percentage 90.59%
Ka/Ks Ratio 0.02684 (Ka = 0.0118, Ks = 0.4411)

Snd1 ENSRNOG00000031173 (Rat)

Gene Details

staphylococcal nuclease and tudor domain containing 1 (Snd1), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000041531, Rat)

Protein Percentage 97.25%
CDS Percentage 90.5%
Ka/Ks Ratio 0.03211 (Ka = 0.0136, Ks = 0.4226)

Genome Location

Sequence Coding sequence

Length: 2733 bp    Location: 8311579..7874701   Strand: -
Raw sequence   
>XM_004856405.1
ATGGCCTCCTCCGCGCAGAGCGGCGGCTCCTCCGGGGGACCCGCGGTCCCCACCGTGCAGCGGGGCATCGTCAAGATGGTCCTCTCAGGGTGTGCCATCATTGTGCGAGGGCAGCCTCGTGGTGGGCCTCCTCCGGAGAGGCAGATTAATCTCAGCAACATTCGCGCTGGAAATCTTGCCCGCAGGGCGGCGGCTGCACAACCGGATGCAAAAGACACCCCAGATGAGCCGTGGGCATTTCCTGCACGAGAGTTCCTTCGCAAGAAGCTGATTGGGAAAGAAGTCTGTTTCACGATAGAAAACAAAACTCCCCAGGGGCGAGAGTATGGCATGATCTACCTTGGAAAAGATACTAATGGGGAAAACATTGCAGAGTCATTGGTTGCAGAGGGCTTGGCCACCCGGAGAGAAGGCATGAGAGCTAATAATCCTGAACAGAACCGGCTTGCAGAATGTGAGGAACAAGCGAAGGCAGCAAAGAAAGGGATGTGGAGTGAGGGGAACGGATCCCATACCATCAGGGACCTCAAGTATACCATTGAGAACCCAAGGCACTTTGTGGACTCACACCACCAGAAACCTGTTAATGCTATCATCGAGCATGTGCGAGATGGCAGTGTGGTCAGGGCTCTGCTTCTCCCGGATTACTACCTGGTCACGGTCATGCTGTCAGGCATCAAGTGCCCAACTTTTCGTCGGGAACCAGATGGCAGTGAAACACCAGAGCCTTTCGCTGCAGAAGCCAAATTTTTCACCGAATCTCGACTGCTTCAGAGAGATGTTCAGATCATCCTGGAGAGCTGCCACAACCAGAACATTCTGGGTACCATCCTTCATCCAAATGGCAATATCACCGAGCTCCTCCTGAAGGAAGGTTTTGCACGTTGTGTGGACTGGTCGATTGCAGTTTATACTCGGGGTGCAGAAAAACTCAGGGCAGCTGAGAGGTTTGCCAAGGAGCGCAGGCTGAGAATATGGAGAGACTATGTACCTCCCACTGCTAATTTGGACCAAAAGGACAAGCAATTTGTTGCCAGGGTGATGCAGGTTCTGAATGCTGATGCCATTGTTGTGAAGCTGAACTCTGGAGATTACAAGACCATCCACCTGTCCAGTATCCGACCACCAAGGCTGGAGGGGGAAAACACACAGGATAAGAACAAGAAACTACGACCTCTGTATGACATTCCCTACATGTTTGAGGCCCGGGAATTTCTTCGAAAAAAGCTTATTGGGAAGAAGGTCAATGTGACAGTGGACTACATTAGACCAGCCAGCCCTGCCACAGAGACAGTGCCTGCCTTCTCAGAGCGTACCTGTGCCACTGTCACCATTGGAGGAATAAACATCGCCGAGGCTCTTGTCAGCAAAGGTCTAGCCACAGTGATCAGATACCGGCAGGATGATGACCAGCGATCTTCACACTATGATGAACTGCTTGCTGCCGAAGCCAGAGCTATTAAGAATGGCAAAGGGTTGCACAGTAAGAAGGAAGTGCCTATCCACCGTGTGGCAGACATCTCTGGGGATACCCAAAAAGCAAAGCAGTTCCTGCCCTTCCTTCAACGGGCAGGGCGTTCCGAAGCTGTGGTGGAGTATGTCTTCAGTGGTTCTCGTCTCAAGCTCTATTTGCCAAAGGAAACTTGCCTTATCACCTTTTTGCTGGCAGGCATCGAATGCCCCAGAGGAGCCCGAAACCTCCCAGGCTTGGTACAGGAAGGAGAGCCCTTCAGCGAGGAAGCCATGCTCTTCACCAAGGAACTGGTGCTGCAGCGTGAGGTGGAGGTGGAGGTGGAGAGCATGGACAAAGCCGGCAACTTCATTGGCTGGCTGCACATGGATGGCGCTAACCTGTCGGTCTTGCTGGTGGAGCATGCGCTCTCCAAGGTCCACTTCACTGCCGAGCGCAGCACCTATTACAAATCCCTGCTGTCTGCCGAGGAAGCTGCCAAGCAGAAAAAAGAGAAGGTCTGGGCCCACTACGAGGAGCAGCCTGTCGAAGAGGTGATGCCCGTGATGGAGGAGAAGGAGCGATCCGCCAGCTATAAGCCAGTGTTTGTGACCGAGATCACCGATGACTTGCATTTCTATGTGCAGGATGTGGAAACCGGCACCCAGCTGGAGAAGCTGATGGAGAACATGCGCAATGACATCTCCAGCCACCCTCCTGTAGAGGGCTCCTATGCCCCCCGCCGGGGAGATTTCTGCATTGCCAAATTTGTAGATGGAGAATGGTACCGTGCCCGAATAGAGAAAGTCGAGTCTCCTGCCAAAGTGCACGTCTTCTACATCGACTATGGCAATAGAGAGATCCTGCCGTCCGCTCGCCTGGGTACCCTGCCACCTGCCTTCAGCACTCGTGTGCTGCCAGCTCAAGCCACGGAGTATGCCTTCGCCTTCATCCAGGTGCCCCAAGATGAGGATGCTCGCACAGATGCTGTGGACAGCGTGGTCCGGGATATCCAGAACACTCAGTGCCTGCTCAACGTGGAGCACCTGAGCGCCAGCTGCCCCCACGTCACCCTGCAGTTCGCGGATTCCAAGGGCGATGTGGGGCTGGGCCTGGTGAAGGAGGGGCTGGTCATGGTGGAAGTGCGCAAGGAGAAACAATTCCAGAAAGTGATCACGGAATACCTGAATGCCCAGGAGTCAGCCAAGAGCGCCAGGCTGAACCTGTGGCGCTATGGAGACTTCCGAGCTGATGACGCGGATGAGTTTGGTTACAGCCGCTAA

Related Sequences

XP_004856462.1 Protein

Snd1 PREDICTED: staphylococcal nuclease domain-containing protein 1 isoform X2 [Heterocephalus glaber]

Length: 910 aa      View alignments
>XP_004856462.1
MASSAQSGGSSGGPAVPTVQRGIVKMVLSGCAIIVRGQPRGGPPPERQINLSNIRAGNLARRAAAAQPDAKDTPDEPWAFPAREFLRKKLIGKEVCFTIENKTPQGREYGMIYLGKDTNGENIAESLVAEGLATRREGMRANNPEQNRLAECEEQAKAAKKGMWSEGNGSHTIRDLKYTIENPRHFVDSHHQKPVNAIIEHVRDGSVVRALLLPDYYLVTVMLSGIKCPTFRREPDGSETPEPFAAEAKFFTESRLLQRDVQIILESCHNQNILGTILHPNGNITELLLKEGFARCVDWSIAVYTRGAEKLRAAERFAKERRLRIWRDYVPPTANLDQKDKQFVARVMQVLNADAIVVKLNSGDYKTIHLSSIRPPRLEGENTQDKNKKLRPLYDIPYMFEAREFLRKKLIGKKVNVTVDYIRPASPATETVPAFSERTCATVTIGGINIAEALVSKGLATVIRYRQDDDQRSSHYDELLAAEARAIKNGKGLHSKKEVPIHRVADISGDTQKAKQFLPFLQRAGRSEAVVEYVFSGSRLKLYLPKETCLITFLLAGIECPRGARNLPGLVQEGEPFSEEAMLFTKELVLQREVEVEVESMDKAGNFIGWLHMDGANLSVLLVEHALSKVHFTAERSTYYKSLLSAEEAAKQKKEKVWAHYEEQPVEEVMPVMEEKERSASYKPVFVTEITDDLHFYVQDVETGTQLEKLMENMRNDISSHPPVEGSYAPRRGDFCIAKFVDGEWYRARIEKVESPAKVHVFYIDYGNREILPSARLGTLPPAFSTRVLPAQATEYAFAFIQVPQDEDARTDAVDSVVRDIQNTQCLLNVEHLSASCPHVTLQFADSKGDVGLGLVKEGLVMVEVRKEKQFQKVITEYLNAQESAKSARLNLWRYGDFRADDADEFGYSR