Sequence details NCBI ID: XM_004856368.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Tnpo3
Gene Name transportin 3, transcript variant X2
Entrez Gene ID 101712424

Database interlinks

Part of NW_004624783.1 (Scaffold)

For more information consult the page for NW_004624783.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

TNPO3 ENSCPOG00000011935 (Guinea pig)

Gene Details

transportin 3

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000010737, Guinea pig)

Protein Percentage 95.07%
CDS Percentage 93.36%
Ka/Ks Ratio 0.19702 (Ka = 0.0336, Ks = 0.1706)

TNPO3 ENSG00000064419 (Human)

Gene Details

transportin 3

External Links

Gene Match (Ensembl Protein ID: ENSP00000265388, Human)

Protein Percentage 99.65%
CDS Percentage 94.09%
Ka/Ks Ratio 0.00741 (Ka = 0.0017, Ks = 0.229)

Tnpo3 ENSMUSG00000012535 (Mouse)

Gene Details

transportin 3

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000012679, Mouse)

Protein Percentage 99.18%
CDS Percentage 90.74%
Ka/Ks Ratio 0.01009 (Ka = 0.004, Ks = 0.3973)

Tnpo3 ENSRNOG00000021758 (Rat)

Gene Details

transportin 3 (Tnpo3), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000040222, Rat)

Protein Percentage 99.07%
CDS Percentage 90.74%
Ka/Ks Ratio 0.01188 (Ka = 0.0046, Ks = 0.3893)

Genome Location

Sequence Coding sequence

Length: 2574 bp    Location: 7169285..7260430   Strand: +
Raw sequence   
>XM_004856368.1
ATGAAGATGAAGATTCAGACCTCATTTTATGAGCTCCCTACAGACTCTCATGCCTCTTTAAGGGACTCATTGCTAACCCATATACAGAACTTGAAAGATTTGTCACCTGTCATTGTAACACAGCTGGCTTTAGCAATAGCAGACCTTGCCCTACAAATGCCTTCCTGGAAGGGATGTGTACAGACATTGGTGGAAAAATATAGCAATGATGTAACTTCTCTGCCTTTTTTGCTGGAGATTCTTACAGTGTTGCCTGAAGAAGTACATAGTCGTTCCTTAAGAATTGGAGCTAATCGGCGCACAGAAATTATAGAAGATTTGGCCTTTTACTCTAGTACAGTAGTGTCTCTATTGATGACCTGTGTAGAAAAGGCGGGAACAGATGAGAAAATGCTTATGAAGGTCTTTCGCTGTTTGGGAAGTTGGTTTAACTTAGGTGTTTTGGATAGTAACTTCATGGCTAATAATAAGTTGTTAGCACTCCTTTTTGAGGTTTTGCAACAGGATAAGACCTCATCCAACCTACATGAAGCTGCTTCAGACTGTGTGTGCTCAGCTCTCTATGCCATAGAGAATGTGGAGACTAATTTGCCATTAGCCATGCAACTTTTTCAGGGAGTCTTGACATTGGAGACTGCTTATCATATGGCCGTGGCACGTGAAGATTTAGACAAAGTTCTGAATTACTGCCGTATTTTCACTGAACTATGTGAAACTTTTCTTGAAAAAATTGTTTGTACTCCAGGCCAAGGTCTTGGAGATCTGCGAACTCTGGAATTGCTTCTGATCTGTGCAGGGCATCCTCAGTATGAGGTAGTAGAAATTTCCTTTAATTTTTGGTACCGACTAGGGGAGCATTTGTACAAAACTAATGATGAGGTCATACATGGCATCTTCAAAGCTTACATTCAGAGGCTTCTTCATGCTTTGGCTCGACACTGCCAGCTGGAACCAGACCATGAGGGGGTTCCTGAGGAAACAGATGACTTTGGGGAGTTTCGAATGAGGGTATCAGACTTGGTAAAGGACTTGATTTTCTTGATTGGGTCTATGGAATGTTTTGCTCAGTTATATTCTACTCTGAAAGAAGGCAACCCACCCTGGGAGGTGACAGAAGCGGTTCTCTTTATCATGGCTGCTATAGCAAAGAGTGTTGATCCGGAGAACAACCCAACACTTGTGGAAGTTCTAGAAGGAGTTGTCCGTCTCCCAGAGACTGTACATACAGCTGTGCGATATACTAGCATTGAGTTGGTTGGAGAAATGAGTGAAGTGGTTGATCGAAATCCTCAGTTCCTTGACCCTGTGTTGGGCTATTTGATGAAAGGCCTGTGTGAAAAGCCCCTGGCTTCTGCTGCAGCTAAAGCCATTCATAACATTTGCTCTGTCTGCCGAGATCACATGGCTCAGCACTTTAATGGACTCCTAGAGATTGCCCGATCCCTTGACTCCTTCATGTTATCTCCAGAAGCTGCTGTGGGCTTGTTAAAAGGGACAGCACTCGTCTTAGCCAGATTACCTTTGGATAAGATTACTGAATGTCTTAGCGAATTATGTTCTGTTCAGGTTATGGCATTGAAAAAGCTGTTGTCTCAGGAGCCCAGCAATGGCATATCTTCAGATCCTACTGTGTTCTTAGATCGCCTGGCAGTGATATTTAGACACACCAATCCCATTGTGGAAAATGGACAGACTCATCCATGCCAAAAAGTCATACAGGAAATATGGCCAGTTTTATCTGAGACCCTAAATAAGCACCGAGCTGATAATCGGATTGTAGAGCGTTGTTGCAGGTGCCTGCGCTTTGCTGTTCGCTGTGTGGGCAAAGGATCTGCAGCCTTGCTGCAGCCACTGGTCACACAGATGGTAAATGTGTACCATGTACATCAGCATTCCTGTTTCCTGTACCTCGGCAGCATCCTTGTGGATGAGTATGGCATGGAAGAAGGCTGTCGGCAGGGACTACTAGACATGCTCCAGGCACTGTGCCTCCCCACCTTTCAGCTCCTGGAACAGCAGAATGGCCTCCAGAATCACCCTGACACTGTAGATGACCTGTTCAGGTTGGCTACCCGGTTTATTCAGCGAAGCCCTGTCACCTTACTGAGGAGCCAAGTAGTTATCCCAATCTTACAGTGGGCCATTGCCTCTACTACCTTGGACCACCGGGATGCCAATTGTAGTGTTATGAGGTTCCTACGAGACCTCATCCATACAGGGGTAGCCAATGATCATGAAGATGACTTTGAGTTACGTAAAGAACTGATTGGACAGGTGATGAACCAGCTTGGACAGCAGCTTGTAAGCCAACTGCTCCACACATGCTGCTTTTGTCTCCCCCCCTATACCTTACCAGATGTGGCTGAAGTGCTCTGGGAGATCATGCAGGTTGATAGACCGACCTTTTGTCGATGGTTAGAGAATTCCTTGAAAGGTTTGCCAAAGGAGACAACCGTGGGAGCTGTCACAGTGACACACAAACAACTTACAGACTTTCACAAACAAGTCACTAGTGCTGAGGAATGTAAGCAAGTTTGCTGGGCCTTGAGAGACTTCACCAGGCTGTTTCGATAG

Related Sequences

XP_004856425.1 Protein

Tnpo3 PREDICTED: transportin-3 isoform X2 [Heterocephalus glaber]

Length: 857 aa      View alignments
>XP_004856425.1
MKMKIQTSFYELPTDSHASLRDSLLTHIQNLKDLSPVIVTQLALAIADLALQMPSWKGCVQTLVEKYSNDVTSLPFLLEILTVLPEEVHSRSLRIGANRRTEIIEDLAFYSSTVVSLLMTCVEKAGTDEKMLMKVFRCLGSWFNLGVLDSNFMANNKLLALLFEVLQQDKTSSNLHEAASDCVCSALYAIENVETNLPLAMQLFQGVLTLETAYHMAVAREDLDKVLNYCRIFTELCETFLEKIVCTPGQGLGDLRTLELLLICAGHPQYEVVEISFNFWYRLGEHLYKTNDEVIHGIFKAYIQRLLHALARHCQLEPDHEGVPEETDDFGEFRMRVSDLVKDLIFLIGSMECFAQLYSTLKEGNPPWEVTEAVLFIMAAIAKSVDPENNPTLVEVLEGVVRLPETVHTAVRYTSIELVGEMSEVVDRNPQFLDPVLGYLMKGLCEKPLASAAAKAIHNICSVCRDHMAQHFNGLLEIARSLDSFMLSPEAAVGLLKGTALVLARLPLDKITECLSELCSVQVMALKKLLSQEPSNGISSDPTVFLDRLAVIFRHTNPIVENGQTHPCQKVIQEIWPVLSETLNKHRADNRIVERCCRCLRFAVRCVGKGSAALLQPLVTQMVNVYHVHQHSCFLYLGSILVDEYGMEEGCRQGLLDMLQALCLPTFQLLEQQNGLQNHPDTVDDLFRLATRFIQRSPVTLLRSQVVIPILQWAIASTTLDHRDANCSVMRFLRDLIHTGVANDHEDDFELRKELIGQVMNQLGQQLVSQLLHTCCFCLPPYTLPDVAEVLWEIMQVDRPTFCRWLENSLKGLPKETTVGAVTVTHKQLTDFHKQVTSAEECKQVCWALRDFTRLFR