Sequence details NCBI ID: XM_004856064.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Apobr
Gene Name apolipoprotein B receptor
Entrez Gene ID 101724473

Database interlinks

Part of NW_004624782.1 (Scaffold)

For more information consult the page for NW_004624782.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

APOBR ENSCPOG00000002459 (Guinea pig)

Gene Details

apolipoprotein B receptor

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000002240, Guinea pig)

Protein Percentage 70.66%
CDS Percentage 82.16%
Ka/Ks Ratio 0.73411 (Ka = 0.2045, Ks = 0.2786)

APOBR ENSG00000184730 (Human)

Gene Details

apolipoprotein B receptor

External Links

Gene Match (Ensembl Protein ID: ENSP00000457539, Human)

Protein Percentage 57.41%
CDS Percentage 71.88%
Ka/Ks Ratio 0.61442 (Ka = 0.3715, Ks = 0.6047)

Apobr ENSMUSG00000042759 (Mouse)

Gene Details

apolipoprotein B receptor

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000042028, Mouse)

Protein Percentage 50.35%
CDS Percentage 66.0%
Ka/Ks Ratio 0.67827 (Ka = 0.5111, Ks = 0.7535)

Apobr ENSRNOG00000017403 (Rat)

Gene Details

apolipoprotein B receptor (Apobr), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000023555, Rat)

Protein Percentage 48.51%
CDS Percentage 64.21%
Ka/Ks Ratio 0.65651 (Ka = 0.5502, Ks = 0.838)

Genome Location

Sequence Coding sequence

Length: 2652 bp    Location: 13005525..13009573   Strand: +
Raw sequence   
>XM_004856064.1
ATGGACTTCCTCCGGCAACACCTCCCTGGGCTACATCAAGCCTTAAGGGGGGCACTGGACTCCCTCAGCACTTTTGTCTCCTACCTCATGGGAGATGAGGTCCCCACTGTAGAGAGGGAGGCACAGGCAGCTGAGGAGCTGGGGGAGGTGGCTGCAAGAGGGCCAGAGAAGATTGAAGCCCAGGAGGCTCTGCACAGCCTTAGAGGTGGCCAAAGCCAGGGGGTTGGAGCACTGAGAGGGCCTGCAGAGGCTGAAGGATGCCAGGAGCAGAGCTCGGCTGCAGAACAGGTCTGGGGGTGGGGAGAAGGCAGCTCCTGCAGGTCCCAAACAGGTAGGCGGGACTCTGGGACCTGGGGGGCAGTCACAGCAGCCAGGGTCCCAGAGCCAAGTGTTCTCTTGAAGGCCAAGAAGACATCTGAGGCAGAGTCTGGACCTCACAGAGACAGGAGCAGTCAAGCCAAGGAGAGACAGGAGTCTGAAGAGCAGGAAGTAAACAGAGGGGACACGCTGAGAACCTGGGAACAGGAGGAGGAGGAGGAAGAAGTCAGAGCAAGAGAGCCAGGGATGGCCAGAGGGGTGGAGTCAGAGCAGCCCTGGCATTGGGAGCCCGAGGCAGAGGCTGGTGCCGAGAGGGAGGAGGTGGCCAGGGACACGGTGGAGACAAGGCCTGTGGTCAGGGAGGCAGTTGCAGAAACTGAAGTGTCTGGGGCCACAGGGCCTCGGAGGGAAGAAGGGGAGGTGGTAGAAGCAAGGACTGGCCAAAGCACAAGGGTCCAAGGGACACATGGCCCAGGAGCAGAGTCTGAGGATTGGACAGCCTCAGCCAGGGAGGAGGCTGACCTCCTAGGAGTCAGGGGGACAGAAGATGGGCTAGTCCCAGGAGACAGACGACCAAAAGCTACTAGTAGTATCAGGATCCCAGAGGAGGCATCCAATGGAGACCAGGAAGAGGAGCCAGAGGAGAAGACAGCAGATGAAGTGAAAGTTTTCCCCAAACAGCCCTGGGCCCTAGTTACTGAAGCAATAGAAGAGGCAGCTGAGGGCCAGAAGACACGGCAGGGGGCTGCAGGAGCCCAGGAGCCAGAGGAGGAGGCAGGAGAACACTTTGAGGGCAAGACAGGTCTGTATAGGACCGAGGCCCACGGCAGGCAAAACTCAGAGAGCAGGGCTGATGGCACCAGGCCGAGGGAGGAGGCCCCAACAGAAGAGCCCCAGGAGAAGAAAGGGAGTCGCCGGGCCCCAGAGGCTGAGCTGGCCCCAGACAAGGAGGCTGAAGGTGAGGTGGACTCAGAAGCAGCCCTGGAGGCTAGGCCTGAGGAGGAGTTCCTGTGGGAGAGAGGCCAGGAGGATCAGATGAGCCAAGGAGCCCTGGGGGTGGAGTGGGGAGATGCCCAGGCGCCAGCAGAGCCACCTGAAGAAGGACAGGGGGGTCAGGGGGCACACAGGCGAGGTCCAGGCCTGAGCAAGGAGGAGACAGAAAGCAGGGAGAAGGAGCAGCCCAGACATGTGGGGTCTCTGCCTCCCGAGGTCCTTGAGGCAGAACCCTGGGAACTCTGGTGGAGAGGGGACACAGAGAGCAAAGTCACCCAGCGGGAAAAAGCAGATGCTGAAGAGGGAGACGAGGAGGCTGCAGGAGGATGGGAGTCTGGACTGCCAGAGAGTCCAGAGTGGGGAATGGAGGAGGGAGACACCTCTGTGGAGGAGAACCAGGAGCTGCAGGGAAACCAAGGGGCAGAGGCAGGGACAGGCCAGGCACTGGGACAGCCAGAGGCCAGAGAAACCAAGGACTATGTGGCTGACATCCCTGCACCAAGGGAGGCCGCCAGAGTACCCAGGGAAGGCTGGAGGCCGCGGGAGGCGGCTCTGAGCCTCCAGAACAGCGAGGACACTGGGACCAGTCCTCTGCCTGCTGAGATGGTGGAGGGCCAGGCAGAGGGGCAGCCTGGGCAAGGCTGGGGCTCTGAGGAGGGACAGGAGGCCGGGGGAGGTGCGGAGCAGGTAGAGGCTGTGCAGGTGCTGCTGGAAGAAGAGTCGTCGGGGAAGTGGCATGTGGGCGAGCAGAGGGGACACAGAGAGAGGCAGTGTGGGGGCCGCCACCCTGAGGGAGAGGCACGAAGGCCGCTCGGCGTGGACACCGCCGCGGGGACTGATGGCTGGAGGACGGAAGCTGAGGGTGCTGCTCCAGAAGACCTGGAGGCTGTCCAGGGCCAGGAGGGGCAACCGGCACACCAGCCCCCTGTGGAGACTGCACCTGGGCCCTCTGCAACTGCAGAGGCCATGGGGAGTGACAGAGGGGACACTCACAGCCACTGGAGTGAGGTCCTGCTGCCCGGGTCCCGCCTGGATGTCTCTGTCTCACGGAGCCGTGCACTCCTGTCACGGAACTCCTCGAAGCGTCGTTCCCGGCCCTCTTTCTGGAGAGCGTCTGCCTCTGAGCAGCAGGACCCTCCCAGCCCCCAGCTGGAGGAGGAGCTGCCCACCCCTGAGCAGAGCCTTCTTCAGCTAGAGGAAGCCCCGGAGCCAAGTCCCTTGCGGCCTGGAGGGACCCCAGAGCTGGCCGGGAGAAAGCTGCTGGGACACGGGTTTGGCCTCGCACACCCTGGCATGATGCAGGAGTTGCAAGCCCGGCTGAGCCAGCGGAAGCCCCAGTGA

Related Sequences

XP_004856121.1 Protein

Apobr PREDICTED: apolipoprotein B receptor [Heterocephalus glaber]

Length: 883 aa      View alignments
>XP_004856121.1
MDFLRQHLPGLHQALRGALDSLSTFVSYLMGDEVPTVEREAQAAEELGEVAARGPEKIEAQEALHSLRGGQSQGVGALRGPAEAEGCQEQSSAAEQVWGWGEGSSCRSQTGRRDSGTWGAVTAARVPEPSVLLKAKKTSEAESGPHRDRSSQAKERQESEEQEVNRGDTLRTWEQEEEEEEVRAREPGMARGVESEQPWHWEPEAEAGAEREEVARDTVETRPVVREAVAETEVSGATGPRREEGEVVEARTGQSTRVQGTHGPGAESEDWTASAREEADLLGVRGTEDGLVPGDRRPKATSSIRIPEEASNGDQEEEPEEKTADEVKVFPKQPWALVTEAIEEAAEGQKTRQGAAGAQEPEEEAGEHFEGKTGLYRTEAHGRQNSESRADGTRPREEAPTEEPQEKKGSRRAPEAELAPDKEAEGEVDSEAALEARPEEEFLWERGQEDQMSQGALGVEWGDAQAPAEPPEEGQGGQGAHRRGPGLSKEETESREKEQPRHVGSLPPEVLEAEPWELWWRGDTESKVTQREKADAEEGDEEAAGGWESGLPESPEWGMEEGDTSVEENQELQGNQGAEAGTGQALGQPEARETKDYVADIPAPREAARVPREGWRPREAALSLQNSEDTGTSPLPAEMVEGQAEGQPGQGWGSEEGQEAGGGAEQVEAVQVLLEEESSGKWHVGEQRGHRERQCGGRHPEGEARRPLGVDTAAGTDGWRTEAEGAAPEDLEAVQGQEGQPAHQPPVETAPGPSATAEAMGSDRGDTHSHWSEVLLPGSRLDVSVSRSRALLSRNSSKRRSRPSFWRASASEQQDPPSPQLEEELPTPEQSLLQLEEAPEPSPLRPGGTPELAGRKLLGHGFGLAHPGMMQELQARLSQRKPQ