Details from NCBI annotation

Gene Symbol Cln3
Gene Name ceroid-lipofuscinosis, neuronal 3, transcript variant X3
Entrez Gene ID 101722930

Database interlinks

Part of NW_004624782.1 (Scaffold)

For more information consult the page for NW_004624782.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

ENSCPOG00000002455 (Guinea pig)

Gene Details

Uncharacterized protein

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000002236, Guinea pig)

Protein Percentage 92.68%
CDS Percentage 90.54%
Ka/Ks Ratio 0.123 (Ka = 0.0404, Ks = 0.3284)

Cln3 ENSMUSG00000030720 (Mouse)

Gene Details

ceroid lipofuscinosis, neuronal 3, juvenile (Batten, Spielmeyer-Vogt disease)

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000081636, Mouse)

Protein Percentage 86.5%
CDS Percentage 83.22%
Ka/Ks Ratio 0.09671 (Ka = 0.0755, Ks = 0.781)

Cln3 ENSRNOG00000019103 (Rat)

Gene Details

ceroid-lipofuscinosis, neuronal 3 (Cln3), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000025898, Rat)

Protein Percentage 84.9%
CDS Percentage 83.22%
Ka/Ks Ratio 0.12419 (Ka = 0.0842, Ks = 0.6778)

Genome Location

Sequence Coding sequence

Length: 1314 bp    Location: 13005103..12995277   Strand: -
>XM_004856062.1
ATGGGATGCTGTGCGGGTTCGCGGCGGCACCTTTCGGATTCCGAGGGGGAGGAGGCCTCCCCGGAGCCCCGAGCCTCTCTGTTGGAGCATCGGGGAGCCCAGTGGAAGAACGCGGTGGGCTTCTGGATCCTGGGCCTTTGCAACAACTTCTCTTATGTGGTGATGCTCAGTGCTGCCCATGACATCCTTAGACAAGAAAGGGCGTCTGGGAATCAGAGCCATGTGGCCCCAGATCCAACGCCCATCCCCCACAACAGCTCATCTCGATTTGACTGCAACTCCATCTCCACGGCTGCGGTGCTCCTGGCAGACATCCTCCCCACCCTCCTCATCAAACTGCTGGCTCCCCTGGGCCTTCATCTTCTGCCCTACAGCCCTCGGGTTCTCGTCAGCGCCATCTGCTCTGCTGGGAGCTTCATCCTGGTTGCCTTTTCGCACTCGGTGGGGACCAGCCTGTGCGGTGTGGTCCTGGCCAGCATCTCCTCTGGTCTGGGGGAGGTCACCTTCCTCTCGCTCACCGCCTTCTACCCAAGGGCTGTGATCTCCTGGTGGTCCTCGGGCACCGGGGGAGCAGGGTTGCTGGGAGCACTGTCCTACCTGGCCCTCACTCAGGCTGGCCTCTCCCCTCAGCACACCCTGCTGTCCATGCTGGAGATCCCTGGCCTGCTGCTGGCCAGCTATTTCTTGTTGCTCACATCTGAGCCCCAGGACCCTGGCAGGGAAGATGAGGCAGAGACCATAGCTCGGCAGCCCCTCATCGGCACAGAGGCCCCAGAGCCGAAGCCAGGCGCCAGCTGGAACCTCTCCCTGCAGGAAAGGTGGACCGTGTTCAAGGGCCTGCTGTGCTGGATTGTCCCCTTGGTGCTGGTCTACTTTGCCGAGTACTTCATCAACCAGGGGCTTTTTGAGCTCCTGTTTTTCCGGAACACATCCCTGAGTCACGCTCAGCAGTACCGCTGGTACCAGATGCTGTACCAGGCCGGGGTCTTTGTCTCTCGCTCTTCTCTCCGCTGCTGTCGTATCCGCTACACCTGGGCCCTGGCCCTGCTGCAGTGCCTCAACTTGGCCTTCCTGCTGGCGGACGTGTTGCTAAGCTTCCTGCCGAGCATGTACCTCGTCTTCCTCATCGTTCTGTATGAGGGGCTCCTGGGGGGTGCAGCCTACGTGAACACCTTCCACAACATCGCCCTGGAGGCCAGCGATGAGCACCGAGAGTTCGCCATGGCGGCCACCTGCATCTCTGACACCCTGGGGATCTCCCTGTCGGGGGTCGTGGCCTTGCCTCTGCATGACTTCCTTTGCCACCTCCCCTGA

Related Sequences

XP_004856119.1 Protein

Cln3 PREDICTED: battenin isoform X3 [Heterocephalus glaber]

Length: 437 aa     
>XP_004856119.1
MGCCAGSRRHLSDSEGEEASPEPRASLLEHRGAQWKNAVGFWILGLCNNFSYVVMLSAAHDILRQERASGNQSHVAPDPTPIPHNSSSRFDCNSISTAAVLLADILPTLLIKLLAPLGLHLLPYSPRVLVSAICSAGSFILVAFSHSVGTSLCGVVLASISSGLGEVTFLSLTAFYPRAVISWWSSGTGGAGLLGALSYLALTQAGLSPQHTLLSMLEIPGLLLASYFLLLTSEPQDPGREDEAETIARQPLIGTEAPEPKPGASWNLSLQERWTVFKGLLCWIVPLVLVYFAEYFINQGLFELLFFRNTSLSHAQQYRWYQMLYQAGVFVSRSSLRCCRIRYTWALALLQCLNLAFLLADVLLSFLPSMYLVFLIVLYEGLLGGAAYVNTFHNIALEASDEHREFAMAATCISDTLGISLSGVVALPLHDFLCHLP