Details from NCBI annotation

Gene Symbol Litaf
Gene Name lipopolysaccharide-induced TNF factor, transcript variant X6
Entrez Gene ID 101725320

Database interlinks

Part of NW_004624782.1 (Scaffold)

For more information consult the page for NW_004624782.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

LITAF ENSCPOG00000006659 (Guinea pig)

Gene Details

lipopolysaccharide-induced TNF factor

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000005998, Guinea pig)

Protein Percentage 91.36%
CDS Percentage 91.77%
Ka/Ks Ratio 0.15532 (Ka = 0.0406, Ks = 0.2617)

LITAF ENSG00000189067 (Human)

Gene Details

lipopolysaccharide-induced TNF factor

External Links

Gene Match (Ensembl Protein ID: ENSP00000459533, Human)

Protein Percentage 82.61%
CDS Percentage 82.82%
Ka/Ks Ratio 0.19992 (Ka = 0.1105, Ks = 0.5526)

Litaf ENSMUSG00000022500 (Mouse)

Gene Details

LPS-induced TN factor

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000023143, Mouse)

Protein Percentage 83.23%
CDS Percentage 81.37%
Ka/Ks Ratio 0.11896 (Ka = 0.099, Ks = 0.8323)

Litaf ENSRNOG00000002520 (Rat)

Gene Details

lipopolysaccharide-induced TNF factor (Litaf), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000003412, Rat)

Protein Percentage 83.23%
CDS Percentage 81.16%
Ka/Ks Ratio 0.11808 (Ka = 0.1006, Ks = 0.8516)

Genome Location

Sequence Coding sequence

Length: 489 bp    Location: 6720710..6748873   Strand: +
>XM_004855874.1
ATGTCGGTTCCAGGACCTTACCAGGCGGCTCCCGGGCCTTCCTCGGTGCCCACTGCGCCCCCATCCTATGAAGAGACGGTGAGAGTTACCAATTACATGCCGACGCCTCCAGCCCCGGGGCCGGGACCGACCACGGGGCTCATGACAGGCCCGGATGGGAAAGGCGTGAACCCTCCTTTGTATTACACCCAACCAATGCCCGTCCTCAACCCCAGTGCCAACACAACAGTACAGACAGTCTTCGTGCAGCAGCCCGTGTCCTTTTTTGACCGCCCCATCCAGATGTGCTGTCCTTCCTGCAACAAGATGATCGTGACTAGGCTGTCCTACAGTGCTGGTGCCCTCACCTGGCTGTCCTGCGGGAGCCTGTGCCTCCTGGGGTGCATCTTGGGCTGCTGCTTCATCCCCTTCTGCGTGGATGCCCTGCAGGACGTGGACCACTACTGTCCCAACTGCAAAGCCCTCCTGGGCACCTACAAGCGCTTGTAG

Related Sequences

XP_004855931.1 Protein

Litaf PREDICTED: lipopolysaccharide-induced tumor necrosis factor-alpha factor homolog isoform X6 [Heterocephalus glaber]

Length: 162 aa      View alignments
>XP_004855931.1
MSVPGPYQAAPGPSSVPTAPPSYEETVRVTNYMPTPPAPGPGPTTGLMTGPDGKGVNPPLYYTQPMPVLNPSANTTVQTVFVQQPVSFFDRPIQMCCPSCNKMIVTRLSYSAGALTWLSCGSLCLLGCILGCCFIPFCVDALQDVDHYCPNCKALLGTYKRL