Sequence details NCBI ID: XM_004855850.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Shisa9
Gene Name shisa homolog 9 (Xenopus laevis), transcript variant X2
Entrez Gene ID 101718728

Database interlinks

Part of NW_004624782.1 (Scaffold)

For more information consult the page for NW_004624782.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

SHISA9 ENSCPOG00000000800 (Guinea pig)

Gene Details

shisa family member 9

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000000717, Guinea pig)

Protein Percentage 93.07%
CDS Percentage 92.74%
Ka/Ks Ratio 0.1673 (Ka = 0.044, Ks = 0.263)

SHISA9 ENSG00000237515 (Human)

Gene Details

shisa family member 9

External Links

Gene Match (Ensembl Protein ID: ENSP00000407958, Human)

Protein Percentage 94.61%
CDS Percentage 93.22%
Ka/Ks Ratio 0.06743 (Ka = 0.0228, Ks = 0.3383)

Shisa9 ENSMUSG00000022494 (Mouse)

Gene Details

shisa homolog 9 (Xenopus laevis)

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000132646, Mouse)

Protein Percentage 93.87%
CDS Percentage 89.62%
Ka/Ks Ratio 0.05177 (Ka = 0.029, Ks = 0.5609)

Genome Location

Sequence Coding sequence

Length: 1227 bp    Location: 5500996..5210902   Strand: -
Raw sequence   
>XM_004855850.1
ATGCGCCGCGTCCTCCGGCTGCTCCTCGGCTGCTTTCTCACCGAGCTGTGCGCCCGCGTGTGCCGGGCGCAGGAGCGAGCCGGGCACGGGCAGCTGGCGCAACTGGGCGGCGTGTTGGTGCTCACTGGGGTTAACCGCTCCGGGGCCGCCTCTGGCGAGGCCGGCGAGGACGCCGGGGTATCAGACGCGCCCCCGACTCGGGCGCCCACGCCGGACTTCTGTCGGGGCTACTTCGATGTTATGGGCCAGTGGGACCCGCCGTTCAACTGCAGCTCGGGCGACTTCATCTTCTGCTGCGGGACTTGTGGCTTCCGGTTCTGTTGCACATTTAAGAAGAGGCGACTGAACCAAAGCACCTGCACCAACTACGACACGCCGCTCTGGCTCAACACTGGCAAGCCCCCTGCGCGAAAGGACGACCCCCTGCACGACCCCACCAAGGACAAGACCAACCTGATCGTCTACATCATCTGCGGGGTGGTGGCTGTCATGGTGCTCGTGGGTATCTTCACCAAGCTGGGGCTGGAGAAAGCGCACCGGCCCCAAAGGGAGCACATGTCCAGGGCACTTGCAGATGTCATGAGGCCACAGGGCCACTGCAACACTGATCACATGGAGAGAGACCTTAACATTGTCGTTCACGTCCAGCACTATGAGAACATGGACACGAGAGCCCCCATAAACAACCTGCACACCACCCAGATGAACAATGCAGTACCCACCTCTCCCCTGCTCCAGCAGATGGGCCATCCACATTCGTACCCCAACCTGGGCCAGATCTCCAACCCCTATGAACAGCAGCCACCAGGCAAAGAGCTCAGCAAGTATGCCTCCTTGAAGGCAGTCGCTGACAAGGTCAATGACGACTTCTACTCCAAGCGACGGCACCTGGCTGAGCTGGCTGCCAAGGGGAACCTACCTCTTCACCCGGTAAGAGTGGAGGACGAGCCCCGGGCCTTCAGCCCTGAGCACGGGCCTGCCAAGCAGAATGGACAGAAGTCTCGCCCCAACAAGATGCCCCAACACCCCCTGGCCTACAACTCCACCGCCAGCTTTAAAGGCTGGGACCCCAATGAGCAGTCTCTCCGGCGGCAGGCGTATGGCAACAAGGGCAAGCTGGGCGCAGCCGAGTCGGGCTCCAGCGAGCCCTTGGGAACTCGCTCCCAGCACTATCCACCCACACAGCCATACTTCATCACCAACAGCAAAACGGAAGTGACTGTCTGA

Related Sequences

XP_004855907.1 Protein

Shisa9 PREDICTED: protein shisa-9 isoform X2 [Heterocephalus glaber]

Length: 408 aa      View alignments
>XP_004855907.1
MRRVLRLLLGCFLTELCARVCRAQERAGHGQLAQLGGVLVLTGVNRSGAASGEAGEDAGVSDAPPTRAPTPDFCRGYFDVMGQWDPPFNCSSGDFIFCCGTCGFRFCCTFKKRRLNQSTCTNYDTPLWLNTGKPPARKDDPLHDPTKDKTNLIVYIICGVVAVMVLVGIFTKLGLEKAHRPQREHMSRALADVMRPQGHCNTDHMERDLNIVVHVQHYENMDTRAPINNLHTTQMNNAVPTSPLLQQMGHPHSYPNLGQISNPYEQQPPGKELSKYASLKAVADKVNDDFYSKRRHLAELAAKGNLPLHPVRVEDEPRAFSPEHGPAKQNGQKSRPNKMPQHPLAYNSTASFKGWDPNEQSLRRQAYGNKGKLGAAESGSSEPLGTRSQHYPPTQPYFITNSKTEVTV