Details from NCBI annotation

Gene Symbol Snx1
Gene Name sorting nexin 1, transcript variant X1
Entrez Gene ID 101706895

Database interlinks

Part of NW_004624781.1 (Scaffold)

For more information consult the page for NW_004624781.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

SNX1 ENSCPOG00000000253 (Guinea pig)

Gene Details

sorting nexin 1

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000000224, Guinea pig)

Protein Percentage 97.5%
CDS Percentage 94.54%
Ka/Ks Ratio 0.06002 (Ka = 0.0118, Ks = 0.1965)

SNX1 ENSG00000028528 (Human)

Gene Details

sorting nexin 1

External Links

Gene Match (Ensembl Protein ID: ENSP00000261889, Human)

Protein Percentage 93.85%
CDS Percentage 91.28%
Ka/Ks Ratio 0.11892 (Ka = 0.0355, Ks = 0.2981)

Snx1 ENSMUSG00000032382 (Mouse)

Gene Details

sorting nexin 1

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000034946, Mouse)

Protein Percentage 94.22%
CDS Percentage 90.04%
Ka/Ks Ratio 0.07063 (Ka = 0.0278, Ks = 0.3942)

Snx1 ENSRNOG00000017029 (Rat)

Gene Details

sorting nexin 1 (Snx1), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000022960, Rat)

Protein Percentage 94.42%
CDS Percentage 89.87%
Ka/Ks Ratio 0.06944 (Ka = 0.0274, Ks = 0.3941)

Genome Location

Sequence Coding sequence

Length: 1563 bp    Location: 8465765..8426190   Strand: -
>XM_004855666.1
ATGGCGTCGGGAGGTGGTGGCTGTAGCGCTGCGGAGAGACTCCCTCCGCCTTTTCCCGGCCTGGATCCAGAGTCCGCGGGGGCTGGGGGCTCAGAACCCGAGGCTGGGGACAGCGACGCTGAAGGGGAGGACATTTTCACCGGCGCCGCGGCGGCCAGTAAGCCCCAGTCTCCAAAGAGAACTGCATCCTTACTTCCCATCAACAATGGCTCCAAAGAAAATGGCATTCATGAGGAACAAGACCAAGAGCCACAAGATCTCTTTGCAGATGCCACAGTGGAGCTATCCCTGGACAGCACACAAAATAATCAAAAGGTCCCTGCCAAAACACTCATTTCTCTGCCTCCACAAGAAGCCACAAATTCTTCTAAGTCCCAGCCAAACTATGAGGAGCTAGAGGAAGAAGAACAAGAGGATCAATTTGATTTGACAGTTGGTATTACCGATCCTGAGAAGATTGGGGATGGTATGAATGCCTATGTGGCCTACAAAGTCACCACACAGACAAGCTTACCCATGTTCAGAAGTAAACAGTTTGCAGTGAAAAGAAGATTCAGTGACTTTCTGGGTCTTTATGAGAAGCTTTCCGAGAAGCATTCTCAGAATGGCTTCATTGTCCCTCCTCCACCTGAGAAGAGCCTCATAGGAATGACAAAAGTGAAAGTTGGGAAAGAAGATTCTTCTTCTGCAGAATTTCTTGAAAAACGAAGGGCTGCTCTAGAAAGGTACCTTCAGAGGGTTGTGAACCATCCCACCATGTTACAAGACCCTGACGTCAGGGAGTTTTTGGAAAAAGAAGAGCTGCCACGTGCTGTGGGGACCCAGACCTTGAGCAGTGCTGGTCTCCTCAAGATGTTCAACAAAGCCACAGATGCAGTCAGCAAAATGACCATCAAGATGAATGAATCAGACATTTGGTTTGAGGAGAAGCTCCAGGAGGTAGAATGTGAGGAGCAGCGCTTACGGAAACTGCACGCTGTGGTAGAAACACTAGTCAACCACAGGAAAGAGCTAGCGCTGAACACAGCCCAGTTTGCAAAGAGTCTAGCCATGCTTGGGAGCTCTGAGGACAACACGGCATTGTCACGGGCACTCTCCCAGCTGGCTGAGGTGGAAGAAAAAATTGAGCAGCTCCACCAGGAACAGGCCAACAATGACTTCTTCCTTCTTGCTGAGCTCCTGAGTGACTACATTCGCCTCCTGGCCATAGTCCGCGCTGCCTTCGACCAGCGTATGAAGATGTGGCAGCGCTGGCAGGATGCTCAGGCCATGCTGCAGAAGAAGCGGGAGGCTGAGGCTCGGCTGCTGTGGGCCAACAAGCCTGACAGGCTACAGCAGGCCAAGGATGATATCACAGAGTGGGAATCTCGAGTGACTCAGTACGAAAGGGACTTCGAAAGGATTTCAACAGTGGTACGGAAAGAAGTGATACGATTTGAGAAAGAGAAATCCAAGGACTTCAAAAACCATGTGATCAAGTACCTTGAGACACTCCTGTATTCACAGCAGCAGCTGGCAAAGTACTGGGAAGCCTTCCTTCCTGAGGCAAAGGCCATCTCCTAA

Related Sequences

XP_004855723.1 Protein

Snx1 PREDICTED: sorting nexin-1 isoform X1 [Heterocephalus glaber]

Length: 520 aa      View alignments
>XP_004855723.1
MASGGGGCSAAERLPPPFPGLDPESAGAGGSEPEAGDSDAEGEDIFTGAAAASKPQSPKRTASLLPINNGSKENGIHEEQDQEPQDLFADATVELSLDSTQNNQKVPAKTLISLPPQEATNSSKSQPNYEELEEEEQEDQFDLTVGITDPEKIGDGMNAYVAYKVTTQTSLPMFRSKQFAVKRRFSDFLGLYEKLSEKHSQNGFIVPPPPEKSLIGMTKVKVGKEDSSSAEFLEKRRAALERYLQRVVNHPTMLQDPDVREFLEKEELPRAVGTQTLSSAGLLKMFNKATDAVSKMTIKMNESDIWFEEKLQEVECEEQRLRKLHAVVETLVNHRKELALNTAQFAKSLAMLGSSEDNTALSRALSQLAEVEEKIEQLHQEQANNDFFLLAELLSDYIRLLAIVRAAFDQRMKMWQRWQDAQAMLQKKREAEARLLWANKPDRLQQAKDDITEWESRVTQYERDFERISTVVRKEVIRFEKEKSKDFKNHVIKYLETLLYSQQQLAKYWEAFLPEAKAIS