Details from NCBI annotation

Gene Symbol Cln6
Gene Name ceroid-lipofuscinosis, neuronal 6, late infantile, variant, transcript variant X1
Entrez Gene ID 101708242

Database interlinks

Part of NW_004624781.1 (Scaffold)

For more information consult the page for NW_004624781.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

CLN6 ENSCPOG00000007282 (Guinea pig)

Gene Details

ceroid-lipofuscinosis, neuronal 6, late infantile, variant

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000006561, Guinea pig)

Protein Percentage 93.2%
CDS Percentage 92.56%
Ka/Ks Ratio 0.08093 (Ka = 0.0306, Ks = 0.3785)

CLN6 ENSG00000128973 (Human)

Gene Details

ceroid-lipofuscinosis, neuronal 6, late infantile, variant

External Links

Gene Match (Ensembl Protein ID: ENSP00000249806, Human)

Protein Percentage 90.29%
CDS Percentage 88.46%
Ka/Ks Ratio 0.05917 (Ka = 0.0459, Ks = 0.7751)

Cln6 ENSMUSG00000032245 (Mouse)

Gene Details

ceroid-lipofuscinosis, neuronal 6

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000034776, Mouse)

Protein Percentage 88.96%
CDS Percentage 85.82%
Ka/Ks Ratio 0.0424 (Ka = 0.0519, Ks = 1.2231)

Cln6 ENSRNOG00000007164 (Rat)

Gene Details

ceroid-lipofuscinosis, neuronal 6, late infantile, variant (Cln6), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000035915, Rat)

Protein Percentage 89.61%
CDS Percentage 85.61%
Ka/Ks Ratio 0.03711 (Ka = 0.0497, Ks = 1.3386)

Genome Location

Sequence Coding sequence

Length: 930 bp    Location: 4866927..4878271   Strand: +
>XM_004855584.1
ATGGAGGCGGCGGCGCGGAGGCGGCAGCAGCCGGGCGCGGCGGGCGCGCAGCCGGGCGCTTCCTTCCTTCAGGGCCGGCACAGCTCCATCAAGGCAGATGAGGCCGACCACACAGCTCCTTTCCACCTCGACCTCTGGTTCTACTTCACCCTGCAGAACTGGGTTCTGGACTTTGGTCGCCCCATTGCTATGCTGGTGTTCCCACTCCAGTGGTTTCCTCTCAACAAGCCCAGCGTTGGCGACTACTTCCATATGGCCTACAACGTCATCACCCCCTTCCTCTTGCTGAAGCTCATCGAGCGGTCCCCTCGCACCCTGCCACGCTCCGTGATCTATGTCAGCATCATCATCTTCATCATGGGTGCCAGCATCCACCTGGTGGGTGACTCTGTCAACCACCGCCTGCTCTTCAGCGGCTACCAGCACCACCTGTCAGTCCGTGAGAACCCCATCATCAAGAACCTCAAGCCGGAGACACTGATTGACTCCTTTGAGCTGCTGTACTACTATGATGAGTACTTGGGCCACTCCATGTGGTACATCCCCTTCTTCCTCATCCTCGTCATGTACTTCAGCGGCTGTTTCACCGCCTCCAAGGCCCAGAGTGTCATGCCCAGGCCTGCCCTGCTGCTGGTAGCACCCAGTGGCCTGTACTACTGGTACCTGGTCACCGAGGGTCAGATCTTCATCCTCTTCATCTTCACCTTCTTTGCCATGCTGGCACTCGTACTACACCAGAAGCGCAGACGGCTCTTCCTGGACAGCAATGGCCTCTTCCTCTTCTACTCCTTTGCCCTCACCCTCTTGCTGGTGACATTCTGGGTCGCCTGGCTATGGAATGACCCAGTACTCAGGAAGAAGTACCCAGGTGTCATCTATGTCCCTGAGCCCTGGGCCTTCTACACTCTCCATGTCAGCAGTGAGCTCTGA

Related Sequences

XP_004855641.1 Protein

Cln6 PREDICTED: ceroid-lipofuscinosis neuronal protein 6 homolog isoform X1 [Heterocephalus glaber]

Length: 309 aa      View alignments
>XP_004855641.1
MEAAARRRQQPGAAGAQPGASFLQGRHSSIKADEADHTAPFHLDLWFYFTLQNWVLDFGRPIAMLVFPLQWFPLNKPSVGDYFHMAYNVITPFLLLKLIERSPRTLPRSVIYVSIIIFIMGASIHLVGDSVNHRLLFSGYQHHLSVRENPIIKNLKPETLIDSFELLYYYDEYLGHSMWYIPFFLILVMYFSGCFTASKAQSVMPRPALLLVAPSGLYYWYLVTEGQIFILFIFTFFAMLALVLHQKRRRLFLDSNGLFLFYSFALTLLLVTFWVAWLWNDPVLRKKYPGVIYVPEPWAFYTLHVSSEL