Sequence details NCBI ID: XM_004855542.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Thsd4
Gene Name thrombospondin, type I, domain containing 4, transcript variant X1
Entrez Gene ID 101724355

Database interlinks

Part of NW_004624781.1 (Scaffold)

For more information consult the page for NW_004624781.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

THSD4 ENSCPOG00000008965 (Guinea pig)

Gene Details

thrombospondin, type I, domain containing 4

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000008056, Guinea pig)

Protein Percentage 91.09%
CDS Percentage 89.78%
Ka/Ks Ratio 0.10057 (Ka = 0.0439, Ks = 0.4361)

THSD4 ENSG00000187720 (Human)

Gene Details

thrombospondin, type I, domain containing 4

External Links

Gene Match (Ensembl Protein ID: ENSP00000347484, Human)

Protein Percentage 88.83%
CDS Percentage 87.34%
Ka/Ks Ratio 0.1007 (Ka = 0.0564, Ks = 0.5604)

Thsd4 ENSMUSG00000032289 (Mouse)

Gene Details

thrombospondin, type I, domain containing 4

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000096257, Mouse)

Protein Percentage 86.17%
CDS Percentage 82.99%
Ka/Ks Ratio 0.08554 (Ka = 0.0749, Ks = 0.8757)

Thsd4 ENSRNOG00000049915 (Rat)

Gene Details

thrombospondin, type I, domain containing 4

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000066562, Rat)

Protein Percentage 76.03%
CDS Percentage 73.81%
Ka/Ks Ratio 0.09177 (Ka = 0.1663, Ks = 1.8116)

Genome Location

Sequence Coding sequence

Length: 3018 bp    Location: 2793735..2217684   Strand: -
Raw sequence   
>XM_004855542.1
ATGGCTCCCCATTTCCTGGGCTTTTTCGGTGTCCTGGGTTCCCTCCTGTTGCTCGGACTCCAGCTCGTCTGCCCGCAGCCCTCCACTGAACACAGAAAGGTCCCGCAGCGGATGGCGGCGGAGGGCGGCCCCGAGGACGGCGGTGGCGCCCCTGGCGTGTGGGGCTCTTGGGGGCCCTGGTCCGCCTGCTCGCGCAGCTGCAATGGCGGCGTCAAGGAGCAGACGCGCCCGTGCCTGCCCGGCTCCCCGGCGCGCGCCTTCGCAGTGTCCGGCCACGTGGTGTCGGCGGTGCGCGCGTCCGTGCCGCTGCACCGCCCCCGCGAGGAGCCGCGCGCGCCCGCCCGAGCCCGTGCCCACGCCCAGGGCCCCGCGGCGCCGCGCGGGAGTCGGCACCCGCAGCCCCGGCCCCGCGCACCCACGGCCCAGAGAAGCAGGACCCAGGGTCCCATTGGCCCTGGCAAGTATGGCTATGGCAAGGCCCCGTACATCTTACCACTGCAGACGGACACCACCCACATGCCACAGAGGCTGCGAAGACAGAGGCCCTCATCCCGGCCATCCCGGTCCCAGGGGGCATCTGCTGTCAGACATGGCTACCGCCTGCCAGCCCACCAGCTCCCCGCCCATGGGCCTCTGTACCAAAGCGAAAATGGCCCTCGCTCTAGACTGCAGGCCTCGGAGGCCTCCATCTACCAGCTACCTTTGACCCATGACCAAGGCTTCCCTGCAGCTTCAAGTCTCTTCCACAGCCCAGAAACAAGCAACAGCCATGGCGTGGGGGCCAACAGGGCGGATCCGAGCTTCTCACAGCCCCTGCGATCTGCAGCTATCTCGTGCATTGGGGCCTATCGACAGTACAAGCTGTGCAACACCAATGCATGTCCAGAAAGCAGTAGAAGTATCCGCGAGGTACAGTGTGCCTCTTACAACAACAAACCATTCATGGGCCGGTTTTATGAATGGGAACCATTTGCAGAAGTAAAGGGCAATCGCAAGTGTGAGCTGAACTGCCAGGCGATGGGCTACCGCTTCTATGTCCGGCAAGCTGAGAAGGTTATCGACGGCACCCCCTGTGACCAAAATGGCACGGCCATCTGCGTGTCCGGACAGTGCAAGAGCATCGGCTGTGATGACTACCTGGGTTCTGACAAAGTCCTGGACAAGTGTGGGGTGTGTGGAGGCGACAACACGGGCTGTCAGGTGGTATCAGGCGTGTTTAAACATGCTCTCACCAGCCTAGGCTACCACCGTGTCGTGGAAATCCCCCAGGGAGCCACAAAAATCAACATCACCGAGATGCACAAGAGTAACAACTATTTGGCCTTGCGAAGTCGTTCTGGCCGCTCCATCATCAATGGGAACTGGGCGATTGACCGTCCCGGGAAATACGAGGGTGGAGGGACCATGTTCACCTACAAACGTCCCAATGAGATTTCGAGCACCGCTGGAGAGTCCTTTCTGGCCGAAGGTCCCACTAACGAGATCTTGGATGTCTACATGATACACCAACAGCCCAACCCCGGCGTGCACTACGAATACATCATCATGGGCACAAATGCCATCAGCCCGCAGGTGCCACCTCAGAGGAGACCAGGGGAGCCCTTAAATGGCCAGCTGGAAGCAGAAGGCAGGAGCCAGGAAGACGGAGAGGAGGAGAGGGCTGAGGAGAAGGAGGACTTGCGTGGGGAGGCCCGGGAGATCTTCCCCTCCGAGGCGGCTCAGACCTTCCCTGTCAGGCATCCAGACAGATTTTCTCCCCATCGGCCAGACAACTCAGTGCCACCAGCGCTGCAGCCCCCAAGGCGGAGCAGGGATCACAACTGGAAACAGCTGGGGACCACAGCGTGCTCGACAACCTGCGGGAAAGGATCGCAGTACCCGATTTTCCGCTGCGTGCACAGAAACACTCACGAAGAGGTTCCCGAGAGCTACTGCGACCCCAACATGAAGCCGACCCCTGAGGAGGAACCCTGCAACCTCTTCTCCTGCCCGGCCTTCTGGGACATTGGGGAGTGGTCCGAGTGCAGCAAGACCTGTGGGCTGGGTATGCAGCACCGCCAGGTGCTGTGCCGCCAGGTGTACGCCAACCGCAGTCTCACGGTGCAGCCCTACCGCTGCCAGCACCTGGAGAAGCCGGAGACCACGAGCACGTGCCAGCTCAAGATCTGCAGCGAGTGGCAGATCCGCACCGACTGGACCTCGTGCTCCGTGCCCTGCGGCGTGGGGCAGAGGAGCCGAGACGTGAAGTGCGTGAGCAACCTGGGTGACGTGGTGGCCGACGAAGAGTGCAACGTGAAGCTCCGGCCCGGCGACATGGAGAACTGCGACCTGGGGCCCTGCGCCAAGAGCTGGTTCCTGGCAGAGTGGAGCGAGAGGTGCTCAGCGGAGTGTGGGGCTGGCGTGCGGACGCGCTCGGTGGTATGCATGACTAACCACGTCAGCAGCCTGCCCCTGGAGGGCTGTGGGAACAACCGGCCAGCCGAGGCCACCCCGTGTGACAACGGGCCCTGTGCAGGCAAGGTGGAGTGGTACTCGGGGAGCTGGAGCCAGTGCTCCATCGAGTGTGGGAGTGGGACCCAGCAGCGAGAGGTGATTTGTGTTAGGAAGGACGCAGACACCTTTGAGGTACTGGACCCCTACGAGTGCGCTTTCCTGGAGAGACCCCCCAGCCAGCAGTCCTGCCACCTCAAGCCCTGTGGGGCCAAGTGGTTTAGCACAGAATGGAGCATGTGCTCCAAGAGCTGCCAGGGCGGCTTCCGGGTCCGGGAAGTGCGGTGTCTGGCAGATGACATGACCCTAAGTAATCTCTGTGACCCTCAGTTGAAACCAGAAGAGAGAGAATCCTGCAACCCTCAGGACTGCGTCCCTGAAATTGATGAAAACTGCCAGGACAAGTACTACAACTGCAATGTGGTGGTGCAGGCGCGGCTCTGTGTCTACAACTACTACAAGACAGCCTGCTGTGCATCCTGTACCCGCGTGGCCGCCAGGCACACTGGCTTCCTGGGGAGCAGATAA

Related Sequences

XP_004855599.1 Protein

Thsd4 PREDICTED: thrombospondin type-1 domain-containing protein 4 isoform X1 [Heterocephalus glaber]

Length: 1005 aa      View alignments
>XP_004855599.1
MAPHFLGFFGVLGSLLLLGLQLVCPQPSTEHRKVPQRMAAEGGPEDGGGAPGVWGSWGPWSACSRSCNGGVKEQTRPCLPGSPARAFAVSGHVVSAVRASVPLHRPREEPRAPARARAHAQGPAAPRGSRHPQPRPRAPTAQRSRTQGPIGPGKYGYGKAPYILPLQTDTTHMPQRLRRQRPSSRPSRSQGASAVRHGYRLPAHQLPAHGPLYQSENGPRSRLQASEASIYQLPLTHDQGFPAASSLFHSPETSNSHGVGANRADPSFSQPLRSAAISCIGAYRQYKLCNTNACPESSRSIREVQCASYNNKPFMGRFYEWEPFAEVKGNRKCELNCQAMGYRFYVRQAEKVIDGTPCDQNGTAICVSGQCKSIGCDDYLGSDKVLDKCGVCGGDNTGCQVVSGVFKHALTSLGYHRVVEIPQGATKINITEMHKSNNYLALRSRSGRSIINGNWAIDRPGKYEGGGTMFTYKRPNEISSTAGESFLAEGPTNEILDVYMIHQQPNPGVHYEYIIMGTNAISPQVPPQRRPGEPLNGQLEAEGRSQEDGEEERAEEKEDLRGEAREIFPSEAAQTFPVRHPDRFSPHRPDNSVPPALQPPRRSRDHNWKQLGTTACSTTCGKGSQYPIFRCVHRNTHEEVPESYCDPNMKPTPEEEPCNLFSCPAFWDIGEWSECSKTCGLGMQHRQVLCRQVYANRSLTVQPYRCQHLEKPETTSTCQLKICSEWQIRTDWTSCSVPCGVGQRSRDVKCVSNLGDVVADEECNVKLRPGDMENCDLGPCAKSWFLAEWSERCSAECGAGVRTRSVVCMTNHVSSLPLEGCGNNRPAEATPCDNGPCAGKVEWYSGSWSQCSIECGSGTQQREVICVRKDADTFEVLDPYECAFLERPPSQQSCHLKPCGAKWFSTEWSMCSKSCQGGFRVREVRCLADDMTLSNLCDPQLKPEERESCNPQDCVPEIDENCQDKYYNCNVVVQARLCVYNYYKTACCASCTRVAARHTGFLGSR