Sequence details NCBI ID: XM_004855443.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Prdm1
Gene Name PR domain containing 1, with ZNF domain, transcript variant X2
Entrez Gene ID 101707985

Database interlinks

Part of NW_004624780.1 (Scaffold)

For more information consult the page for NW_004624780.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

PRDM1 ENSCPOG00000014064 (Guinea pig)

Gene Details

PR domain containing 1, with ZNF domain

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000012667, Guinea pig)

Protein Percentage 92.38%
CDS Percentage 91.85%
Ka/Ks Ratio 0.14402 (Ka = 0.0367, Ks = 0.255)

PRDM1 ENSG00000057657 (Human)

Gene Details

PR domain containing 1, with ZNF domain

External Links

Gene Match (Ensembl Protein ID: ENSP00000358092, Human)

Protein Percentage 90.15%
CDS Percentage 89.05%
Ka/Ks Ratio 0.14227 (Ka = 0.0517, Ks = 0.3634)

Prdm1 ENSMUSG00000038151 (Mouse)

Gene Details

PR domain containing 1, with ZNF domain

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000101129, Mouse)

Protein Percentage 88.28%
CDS Percentage 86.45%
Ka/Ks Ratio 0.12091 (Ka = 0.0615, Ks = 0.5083)

Prdm1 ENSRNOG00000000323 (Rat)

Gene Details

PR domain containing 1, with ZNF domain (Prdm1), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000040939, Rat)

Protein Percentage 87.32%
CDS Percentage 85.93%
Ka/Ks Ratio 0.12459 (Ka = 0.0667, Ks = 0.5354)

Genome Location

Sequence Coding sequence

Length: 2472 bp    Location: 16227310..16207429   Strand: -
Raw sequence   
>XM_004855443.1
ATGTTGGATCTTTGCTTGGAAAAACGTGTGGGTACAATCTCGGCTGCCCCCAAGTGTAGCTCCAGCTTTGTGAAGATTCAAGGGTTGGCAGAGGGGACTGAGGAGACCATGAAAATGGACATGGAAGATGCAGATATGACTCTGTGGACAGAGGCTGAGTTTGAAGAGAAATGTACATACATTGTGAATGACCACCCCTGGGATTCTGGTGCCGATGGGGCGACTTTAGTTCAGGCAGAAGCATCCTTACCAAGGAATCTTCTTTTCAAATGTGCTACCAACAGCAAAGAGGTTATTGGAGTTGTGAGTAAAGAATACATACCAAAGGGAACACGATTTGGACCTCTAATAGGTGAAATCTACACCAGCGATACAGTTCCCAAGAATGCCAACAGGAAATATTTTTGGCGGATCTATTCCAGAGGGGAGCTTCACCACTTCATTGACGGCTTTAATGAAGAGAAGAGCAACTGGATGCGCTATGTGAATCCAGCACACTCTGCCCGGGAGCAAAACCTGGCTGCGTGTCAGAACGGGATGAACATCTACTTCTACACCATTAAGCCCATCCCTGCCAACCAGGAACTTCTTGTGTGGTATTGTCGGGACTTTGCAGAAAGGCTTCACTACCCTTATCCTGGAGAGCTCACAATGCTTAATCTCACTCAAACACAGAACAGCAACCCAAAGCAACCGAGTGCTGAAAAAACTGAACTTTGCCCAAAGAATGTCCCAAAGAGAGAGTACAGTGTGAGAGAAATCCTGAAATTGGACTCCAGCCCCTCCAAAGGGAAGGACTTCTACTGTTCTAACATTTCACCCCTTGCTTCAGAAAAGGACATGGATGACTTTAGGAAAAATGGGAGCCCTGAAATGCCCTTTTATCCTCGGGTAGTGTACCCCATCCGGGGCCCTCTGCCGGAAGACTTTTTGAAAGCCTATGGGATGGAGAGACCGACTTATATCACTCACTCTCCCATTCCATCCTCCACAACTCCAAGTCCCTCAGCAGGAAGCAGCCCTGACCAAAGCCTGAAAAGCTCTAGCCCTCATTGCAGCCCAGGGGACACTGTGTCTCCACTGGCTCCTGGCTCTCAAGAACATCGGGACTCCTACACTTACTTGAATGCACCCTATGGCACTGAAGGTCTGGGCTCTTACTCTGGATACCCACCCCCACCCCACCTCTCACCAGCTTTCATCCCCTCTTATAATGCTCACTACCCCAAGTTCCTGCTACCCCCCTATGGCATGAATTGCAATGGCTTGAGTGCTATGAGCAACGTCAATGGCATCAACAACTTCAGCCTCTTCCCTAGGTTGTACCCTGTCTATAGTAACCTCCTGGGCGGGGGCAGCTTGCCTCACCCTGTGCTCAGCCCAGCTTCATTTCCGAGTTCCCTGCCCTCGGATGGGGCCCGAAGGTTGCTTCCTCCTGAGCACCCCAGAGACATATTTGTCCCAGCACTCTGCAGTGCCTTTTCCCCTACTGGGGCAGCCGCCAGCATGAAGGACAAGACATGTAGCCCCACGAGTGGGTCTCCAACGGCGGGAACAGCTGCCACGGCAGAACATGTGGTACAACCCAATGCTACCTCAGCAGTGATGGCAACCCCCAGCAGTGATGAAGCCATGAATCTCATTAAAAACAAAAGAAACATGACTGGCTATAAGACACTTCCCTACCCGCTGAAGAAACAGAATGGCAAGATTAAGTATGAGTGCAACGTGTGTGCCAAGACTTTCGGCCAGCTCTCGAATCTGAAGGTCCACCTGAGAGTGCACAGTGGAGAACGGCCTTTCAAATGTCAGACTTGCAACAAGGGCTTTACGCAGCTTGCCCACCTGCAGAAACACTACCTGGTACACACAGGAGAGAAGCCACATGAGTGCCAGGTCTGCCACAAGCGATTTAGCAGCACCAGCAATCTCAAGACCCACCTTCGACTCCACTCCGGAGAGAAACCTTACCAGTGCAAGGTGTGCCCTGCCAAGTTCACCCAGTTTGTGCACTTGAAGTTGCACAAGCGACTGCACACCCGGGAGCGGCCCCACAAGTGTGCCCAGTGCCATAAGAGCTACATCCATCTCTCCAGCCTCAAGGTCCACCTGAAGGGGAACTGCCCTGTGGCCCCCACCAACAGGCTGCCCTTGGAGGACCTGACCCGAATCAATGAAGAAATCGAGAAGTTTGACATTAGTGACAATGCTGACCGGCTTGAGGACATGGAGGACAGCATTGATGTGACCTCAGTGGTGGAGAAAGAAATTCTGGCCATGGTCAGAAAAGAGAAAGAAGAAAGTGGCCTGAAAGTATCTTTGCAAAGAAACATGAGCAATGGACTCCTCTCCTCAGGGTGCAGCCTTTATGAGTCATCAGACCTGTCCCTCATGAAGTTGCCCCACAGCAGCCCACTACCTCTGGTACCTGTCAAGGTCAAGCAAGAGACAGTTGAACCAATGGATCCTTAA

Related Sequences

XP_004855500.1 Protein

Prdm1 PREDICTED: PR domain zinc finger protein 1 isoform X2 [Heterocephalus glaber]

Length: 823 aa      View alignments
>XP_004855500.1
MLDLCLEKRVGTISAAPKCSSSFVKIQGLAEGTEETMKMDMEDADMTLWTEAEFEEKCTYIVNDHPWDSGADGATLVQAEASLPRNLLFKCATNSKEVIGVVSKEYIPKGTRFGPLIGEIYTSDTVPKNANRKYFWRIYSRGELHHFIDGFNEEKSNWMRYVNPAHSAREQNLAACQNGMNIYFYTIKPIPANQELLVWYCRDFAERLHYPYPGELTMLNLTQTQNSNPKQPSAEKTELCPKNVPKREYSVREILKLDSSPSKGKDFYCSNISPLASEKDMDDFRKNGSPEMPFYPRVVYPIRGPLPEDFLKAYGMERPTYITHSPIPSSTTPSPSAGSSPDQSLKSSSPHCSPGDTVSPLAPGSQEHRDSYTYLNAPYGTEGLGSYSGYPPPPHLSPAFIPSYNAHYPKFLLPPYGMNCNGLSAMSNVNGINNFSLFPRLYPVYSNLLGGGSLPHPVLSPASFPSSLPSDGARRLLPPEHPRDIFVPALCSAFSPTGAAASMKDKTCSPTSGSPTAGTAATAEHVVQPNATSAVMATPSSDEAMNLIKNKRNMTGYKTLPYPLKKQNGKIKYECNVCAKTFGQLSNLKVHLRVHSGERPFKCQTCNKGFTQLAHLQKHYLVHTGEKPHECQVCHKRFSSTSNLKTHLRLHSGEKPYQCKVCPAKFTQFVHLKLHKRLHTRERPHKCAQCHKSYIHLSSLKVHLKGNCPVAPTNRLPLEDLTRINEEIEKFDISDNADRLEDMEDSIDVTSVVEKEILAMVRKEKEESGLKVSLQRNMSNGLLSSGCSLYESSDLSLMKLPHSSPLPLVPVKVKQETVEPMDP