Sequence details NCBI ID: XM_004855431.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Sobp
Gene Name sine oculis binding protein homolog (Drosophila), transcript variant X2
Entrez Gene ID 101702938

Database interlinks

Part of NW_004624780.1 (Scaffold)

For more information consult the page for NW_004624780.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

SOBP ENSCPOG00000012904 (Guinea pig)

Gene Details

sine oculis binding protein homolog (Drosophila)

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000011616, Guinea pig)

Protein Percentage 92.71%
CDS Percentage 92.15%
Ka/Ks Ratio 0.18171 (Ka = 0.0421, Ks = 0.2315)

SOBP ENSG00000112320 (Human)

Gene Details

sine oculis binding protein homolog (Drosophila)

External Links

Gene Match (Ensembl Protein ID: ENSP00000318900, Human)

Protein Percentage 96.88%
CDS Percentage 94.57%
Ka/Ks Ratio 0.07566 (Ka = 0.0152, Ks = 0.201)

Sobp ENSMUSG00000038248 (Mouse)

Gene Details

sine oculis-binding protein homolog (Drosophila)

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000040072, Mouse)

Protein Percentage 94.68%
CDS Percentage 90.43%
Ka/Ks Ratio 0.06448 (Ka = 0.0261, Ks = 0.4046)

Sobp ENSRNOG00000000316 (Rat)

Gene Details

sine oculis-binding protein homolog (Drosophila) (Sobp), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000000348, Rat)

Protein Percentage 94.68%
CDS Percentage 90.47%
Ka/Ks Ratio 0.06364 (Ka = 0.0259, Ks = 0.4071)

Genome Location

Sequence Coding sequence

Length: 2610 bp    Location: 14772910..14636671   Strand: -
Raw sequence   
>XM_004855431.1
ATGGCAGAAATGGAGAAAGAAGGGAGACCTCCGGAAAATAAAAGGAGCAGGAAACCGGCTCACCCCGTGAAAAGAGAGATCAATGAGGAAATGAAGAACTTTGCAGAAAACACCATGAATGAACTCCTTGGCTGGTATGGCTATGATAAGGTTGAATTAAAAGATGGTGAAGATATTGAATTCAGGAGCTACCCTACAGATGGGGAGAGCCGGCAGCACATTTCTGTTCTCAAAGAAAATTCTTTGCCAAAACCAAAATTACCCGAGGACAGTGTTATTTCACCATACAATATAAGCACAGGGTATTCAGGGCTTGCCACTGGAAATGGACTCAGTGACTCACCTGCAGGGTCAAAGGATCATGGCAATGTGCCCATTATTGTACCTTTAATTCCACCACCTTTCATAAAGCCACCAGCAGAAGATGATGTGTCAAATGTACAAATAATGTGTGCCTGGTGCCAGAAAGTGGGAATCAAGCGCTATTCCCTGAGTATGGGAAGCGAGGTGAAAAGCTTCTGCAGCGAGAAGTGCTTTGCAGCGTGCCGGCGAGCCTACTTCAAGAGGAACAAGGCTAGAGATGAAGATGGACATGCTGAAAATTTTCCCCAGCAGCACTATGCTAAGGAAACTCCAAGGCTTGCCTTCAAGAATAACTGCGAACTACTTGTATGTGACTGGTGTAAGCACATAAGACACACAAAAGAATACCTGGATTTTGGGGACGGGGAAAGAAGGCTTCAGTTCTGCAGTGCAAAATGTCTCAATCAATACAAAATGGACATTTTCTACAAAGAGACACAGGCCAATCTTCCAGCTGGGCTGTGCAGTACATTACACCCTCCCATGGAAAATAAAGCAGAAGGCGCCGGGGTGCAGCTGCTCACTCCAGACTCTTGGAATATCCCGCTGACAGATGCTCGGAGGAAGCCCCCCTCCCCGGTGGCTGCAGCTGGCCAAAGCCAAAGCCAGGGCCCTGGCCCATCGGCGTCCACCACCGTCTCTCCATCTGACACTGCCAACTGCTCTGTCGGTAAAATCCCCACGCCAGTGCCCAAGTCCATCCCTATCAGCGAGACTCCAAACATCCCTCCTGTCTCCGTCCAGCCGCCTGCTAGCATCGGGCCTCCCCTCGGCGTCCCACCTCGTAGTCCTCCTATGGTGATGACCAACCGTGGCCCGGTGCCGCTGCCTATCTTCATGGAGCAGCAGATCATGCAGCAGATCCGCCCACCTTTCATCCGCGGGCCCCCGCACCACGCCTCCAACCCCAACAGCCCTCTGTCCAACCCCATGCTGCCCGGCATCGGGCCCCCGCCCGGCGGCCCCAGGAACTTGGGGCCCACTTCCAGCCCCATGCACCGGCCCATGCTGTCGCCCCACATCCACGCCCCGAGCACCCCCACGATGCCCGGGAACCCCCCAGGCCTGTTGCCCCCTCCGCCCCCGGGCGCCCCCCTGCCAAGCCTTCCCTTCCCGCCAGTGAGCATGATGCCCAATGGCCCGATGCCGGTGCCCCAGATGATGAATTTCGGGCTGCCGTCCCTCGCCCCGCTGGTGCCGCCTCCCACCCTGCTCGTGCCGTACCCCGTGATCGTGCCCCTGCCCGTGCCCATCCCCATCCCCATCCCCATCCCCCACGTCAATGATTCCAAGCCCCCCAGTGGATTCTCCAGCAACGGGGAGAACTTCATTCCCAGCGCCCCCGGCGACTCCTCGGCGGCGGCGGGCGGCAAGGCCGGCGGACGCTCCCTGTCGCCCCGGGACTCCAAGCAGGGCTCGTCCAAGTCGGCGGACTCGCCGCCCGGCTGCTCGGGTCAGGCCCTGAGCCTGGCGCCTGCGCCCCCAGAGCTCGTCCGGGGCGAGGTGGTGGACCTGACGCGGCGCGCGGGCAGCCCCCCGGGCGCAGGCGGCACGCTCGGCTTCCCGGGGGTGCTGCAGGGCCCGCAGGACGGCGTCATTGACCTCACCGTGGGCCACCGTGCGAGGCTGCACAACGTGATCCACCGTGCACTGCACGCGCACGTCAAGACGGAGCGTGAGCCGGGCGCCGCAGAGCGCAGGACCTGCGGCGGTTGCAGGGACGGGCACTGTAGCCCGCCCGCCGCCGGCGACCCAGGCCCGGGCGCCCCCGCGGGCCCCGAGGCGGCCGCGGCCTGCAACGTCATTGTGAACGGCACGCGCGGCGCCGTGGAGGTGGCCAAGAGCGCGGAGCCGCCCCCAGAGCAGCCGCCCCCTCCGCCGCCACCCAAGAAGCTGCTGTCGCCGGAGGAGCCTGCGGTGAGCGAGCTGGAGTCGGTCAAGGAGAACAACTGTGCTTCCAATTGCCACCTGGACGGGGAGGCGGCCAAGAAGCTGGTGGGGGAGGAGGCCCTGGCGGGGGGCGACAAATCGGACCCGAACCTTAACAACCCCGCGGACGAGGACCACGCCTATGCTCTGCGGATGCTGCCCAAGACCGGCTGCGTGATCCAGCCTGTGCCAAAACCCGCAGAGAAGACTGCCATGGCCCCGCGCATCATCTCCTCTCCCCTGCTCGGCGCCGGGCCCGAGGACCTGGAGCCGCCGCTCAAAAGGAGGTGCCTCCGAATTAGAAATCAGAATAAGTAA

Related Sequences

XP_004855488.1 Protein

Sobp PREDICTED: sine oculis-binding protein homolog isoform X2 [Heterocephalus glaber]

Length: 869 aa      View alignments
>XP_004855488.1
MAEMEKEGRPPENKRSRKPAHPVKREINEEMKNFAENTMNELLGWYGYDKVELKDGEDIEFRSYPTDGESRQHISVLKENSLPKPKLPEDSVISPYNISTGYSGLATGNGLSDSPAGSKDHGNVPIIVPLIPPPFIKPPAEDDVSNVQIMCAWCQKVGIKRYSLSMGSEVKSFCSEKCFAACRRAYFKRNKARDEDGHAENFPQQHYAKETPRLAFKNNCELLVCDWCKHIRHTKEYLDFGDGERRLQFCSAKCLNQYKMDIFYKETQANLPAGLCSTLHPPMENKAEGAGVQLLTPDSWNIPLTDARRKPPSPVAAAGQSQSQGPGPSASTTVSPSDTANCSVGKIPTPVPKSIPISETPNIPPVSVQPPASIGPPLGVPPRSPPMVMTNRGPVPLPIFMEQQIMQQIRPPFIRGPPHHASNPNSPLSNPMLPGIGPPPGGPRNLGPTSSPMHRPMLSPHIHAPSTPTMPGNPPGLLPPPPPGAPLPSLPFPPVSMMPNGPMPVPQMMNFGLPSLAPLVPPPTLLVPYPVIVPLPVPIPIPIPIPHVNDSKPPSGFSSNGENFIPSAPGDSSAAAGGKAGGRSLSPRDSKQGSSKSADSPPGCSGQALSLAPAPPELVRGEVVDLTRRAGSPPGAGGTLGFPGVLQGPQDGVIDLTVGHRARLHNVIHRALHAHVKTEREPGAAERRTCGGCRDGHCSPPAAGDPGPGAPAGPEAAAACNVIVNGTRGAVEVAKSAEPPPEQPPPPPPPKKLLSPEEPAVSELESVKENNCASNCHLDGEAAKKLVGEEALAGGDKSDPNLNNPADEDHAYALRMLPKTGCVIQPVPKPAEKTAMAPRIISSPLLGAGPEDLEPPLKRRCLRIRNQNK