Sequence details NCBI ID: XM_004855218.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Galnt1
Gene Name UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1 (GalNAc-T1), transcript variant X1
Entrez Gene ID 101709888

Database interlinks

Part of NW_004624779.1 (Scaffold)

For more information consult the page for NW_004624779.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

GALNT1 ENSCPOG00000013115 (Guinea pig)

Gene Details

UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1 (GalNAc-T1)

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000011805, Guinea pig)

Protein Percentage 98.93%
CDS Percentage 97.02%
Ka/Ks Ratio 0.04313 (Ka = 0.0049, Ks = 0.1129)

GALNT1 ENSG00000141429 (Human)

Gene Details

UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1 (GalNAc-T1)

External Links

Gene Match (Ensembl Protein ID: ENSP00000269195, Human)

Protein Percentage 98.93%
CDS Percentage 95.41%
Ka/Ks Ratio 0.03378 (Ka = 0.0065, Ks = 0.1909)

Galnt1 ENSMUSG00000000420 (Mouse)

Gene Details

UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000132142, Mouse)

Protein Percentage 97.85%
CDS Percentage 92.73%
Ka/Ks Ratio 0.03529 (Ka = 0.0113, Ks = 0.3214)

Galnt1 ENSRNOG00000016207 (Rat)

Gene Details

UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1 (GalNAc-T1) (Galnt1), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000022117, Rat)

Protein Percentage 98.03%
CDS Percentage 91.41%
Ka/Ks Ratio 0.02773 (Ka = 0.0108, Ks = 0.3886)

Genome Location

Sequence Coding sequence

Length: 1680 bp    Location: 9969710..10044284   Strand: +
Raw sequence   
>XM_004855218.1
ATGAGAAAATTTGCATATTGCAAGGTGGTCCTAGCCACCTCCTTGATTTGGGTACTCTTGGATATGTTCCTGCTGCTTTACTTCAGTGAATGCAACAAATGTGATGAGAGAAAGGAGAGAGGACTTCCTGCTGGGGATGTTCTAGAGCCAGTACAAAAACCTCATGAAGGTCCTGGAGAAATGGGGAAACCAGTCATCATTCCTAAAGAGGATCAAGAGAAAATGAAAGAAATGTTTAAAATCAATCAGTTCAATTTAATGGCAAGTGAGATGATTGCACTCAACAGAAGTTTACCTGATGTTAGGTTAGAAGGGTGTAAAACAAAGGTGTATCCAGATAATCTTCCAACAACAAGTGTCGTGATCGTTTTCCACAATGAGGCTTGGAGCACACTTCTTCGAACTGTTCATAGTGTCATTAATCGCTCACCAAGACACATGGTAGAAGAAATTGTTCTAGTAGATGATGCCAGTGAAAGAGACTTTTTGAAAAGACCTCTAGAGAGTTACGTGAAAAAACTAAAAGTGCCAGTTCACGTAATTCGAATGGAACAGCGTTCTGGATTGATCAGAGCTAGATTAAAAGGAGCTGCTGTCTCCAAAGGTCAAGTGATCACCTTCTTAGATGCTCATTGTGAGTGCACAGTGGGATGGCTGGAGCCTCTCTTAGCCCGGATCAAACAAGACAGGAGAACAGTGGTATGTCCTATCATTGATGTGATCAGCGATGATACTTTTGAGTATATGGCAGGCTCTGATATGACATATGGTGGATTTAATTGGAAACTCAATTTTCGCTGGTATCCTGTTCCCCAAAGAGAAATGGACAGAAGGAAAGGTGATCGAACTCTTCCTGTCAGAACACCTACAATGGCAGGAGGCCTTTTTTCAATAGACAGAGATTACTTTCAGGAAATTGGAACATACGATGCTGGAATGGATATTTGGGGAGGAGAAAATCTAGAAATTTCCTTTAGGATCTGGCAGTGTGGAGGAACTTTGGAAATTGTTACGTGCTCACATGTTGGACATGTGTTTCGGAAAGCAACACCTTACACATTTCCAGGAGGCACGGGGCAGATCATCAATAAAAATAACAGACGACTTGCAGAAGTGTGGATGGATGAATTCAAGAATTTCTTCTATATAATTTCACCTGGTGTTACAAAGGTAGATTATGGAGATATATCATCAAGACTTGGTCTGAGACACAAACTACAATGCAAACCTTTCTCTTGGTACCTTGAGAATATCTACCCTGATTCTCAAATTCCACGTCATTATTTCTCATTGGGAGAGATACGAAATGTGGAAACAAATCAGTGTCTAGATAACATGGCTAGAAAAGAGAATGAAAAAGTTGGAATTTTTAACTGTCATGGTATGGGAGGTAATCAGGTTTTCTCTTATACTGCCAACAAAGAAATTAGAACAGATGACCTTTGCTTGGATGTTTCCAAACTTAATGGCCCCGTTACCATGCTCAAATGCCACCACCTAAAAGGCAACCAACTCTGGGAGTATGACCCAGTGAAATTAACCCTGCAGCATGTGAACAGTAATCAGTGCCTGGATAAAGCCACAGAAGAGGATAGCCAGGTGCCCAGCATTAGAGACTGCAGCGGAAGCCGGTCCCAGCAGTGGCTTCTTCGAAACGTTACCCTTCCAGAAATATTCTGA

Related Sequences

XP_004855275.1 Protein

Galnt1 PREDICTED: polypeptide N-acetylgalactosaminyltransferase 1-like isoform X1 [Heterocephalus glaber]

Length: 559 aa      View alignments
>XP_004855275.1
MRKFAYCKVVLATSLIWVLLDMFLLLYFSECNKCDERKERGLPAGDVLEPVQKPHEGPGEMGKPVIIPKEDQEKMKEMFKINQFNLMASEMIALNRSLPDVRLEGCKTKVYPDNLPTTSVVIVFHNEAWSTLLRTVHSVINRSPRHMVEEIVLVDDASERDFLKRPLESYVKKLKVPVHVIRMEQRSGLIRARLKGAAVSKGQVITFLDAHCECTVGWLEPLLARIKQDRRTVVCPIIDVISDDTFEYMAGSDMTYGGFNWKLNFRWYPVPQREMDRRKGDRTLPVRTPTMAGGLFSIDRDYFQEIGTYDAGMDIWGGENLEISFRIWQCGGTLEIVTCSHVGHVFRKATPYTFPGGTGQIINKNNRRLAEVWMDEFKNFFYIISPGVTKVDYGDISSRLGLRHKLQCKPFSWYLENIYPDSQIPRHYFSLGEIRNVETNQCLDNMARKENEKVGIFNCHGMGGNQVFSYTANKEIRTDDLCLDVSKLNGPVTMLKCHHLKGNQLWEYDPVKLTLQHVNSNQCLDKATEEDSQVPSIRDCSGSRSQQWLLRNVTLPEIF