Sequence details NCBI ID: XM_004855063.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Tmtc1
Gene Name transmembrane and tetratricopeptide repeat containing 1, transcript variant X1
Entrez Gene ID 101698394

Database interlinks

Part of NW_004624778.1 (Scaffold)

For more information consult the page for NW_004624778.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

TMTC1 ENSCPOG00000014889 (Guinea pig)

Gene Details

transmembrane and tetratricopeptide repeat containing 1

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000013416, Guinea pig)

Protein Percentage 93.59%
CDS Percentage 91.15%
Ka/Ks Ratio 0.12288 (Ka = 0.0363, Ks = 0.2955)

TMTC1 ENSG00000133687 (Human)

Gene Details

transmembrane and tetratricopeptide repeat containing 1

External Links

Gene Match (Ensembl Protein ID: ENSP00000442046, Human)

Protein Percentage 84.62%
CDS Percentage 81.17%
Ka/Ks Ratio 0.14265 (Ka = 0.1027, Ks = 0.7199)

Tmtc1 ENSMUSG00000030306 (Mouse)

Gene Details

transmembrane and tetratricopeptide repeat containing 1

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000056353, Mouse)

Protein Percentage 86.51%
CDS Percentage 82.47%
Ka/Ks Ratio 0.10134 (Ka = 0.0782, Ks = 0.7721)

Tmtc1 ENSRNOG00000001854 (Rat)

Gene Details

Protein Tmtc1

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000061944, Rat)

Protein Percentage 86.45%
CDS Percentage 81.94%
Ka/Ks Ratio 0.09508 (Ka = 0.0795, Ks = 0.836)

Genome Location

Sequence Coding sequence

Length: 2382 bp    Location: 5961855..6209789   Strand: +
Raw sequence   
>XM_004855063.1
ATGGCCGAGAACACCAGCCACAAGTCCTACCGGCCGCTGTGCGTCCTCACCTTCAAGCTCAACATCCTGTTGACTGGCATGGACCCGTTCTACTTCCATGCAGTGAATGTGATCCTACACTGCCTGGTGACACTTGTGCTGATGTACACCTGTGATAAAGCTGTCTTCAGGAGCCGGGGGCTGGCCTTCGCCACGGCCTTGCTGTTCGCCGTGCACCCTGTCCACACTGAGGCGGTGGCTGGGATTGTTGGCAGAGCTGACGTGTTGGCATGTCTCCTATTTCTGCTGGCCTTTCTATCCTACAGCAGGGGTCTGGACCAGTGTGGCACTGGGGGCCGGCTCCCTCCCTCGGCTTCACCCTTCTTCCTGTTGCTCAGTTTGGTTCTGGGGACCTGTGCGATGCTGGTGAAGGAGACCGGTGTCACCGTGTTCGGAGTGTGCTTGGTTTATGACTTCTTTTCCCTCCCCCACAAGCAGGACAAATTGTCTCTGACAGCAAGCAGCGATAGGAATTGCCTGCTTACCATGAGGCCATTTTTTAAAAGGGCCATTTTGGTTGTAAGTTATGTCATTATCATTTTGTACTTCCGTCTGTGGATAATGGGAGGATCTATGCCCCTCTTTTCAGAGCAGGATAATCCAGCTTCGTTTTCGCCTTATATTCTTACAAGATTCCTTACTTATTCCTACCTCTTGGCCTTCAACGTGTGGCTTCTGCTTGCACCTGTTACCCTGTGCTACGACTGGCAGGTTGGCAGTATTCCTCTGGTGGAGACCATATGGGACACGAGGAACTTAGCCACTGTCTTTCTGGCGGTCGTGATGGCCTTACTGAGCCTGCACTGCCTAGCTGCCCTAAAGAGGCTGGAGCACAAGGAAGTCCTCGTGGGCTTGTTGTTCCTGGTGTTCCCGTTCATTCCCGCCAGCAACCTCTTCTTCAGGGTGGGCTTTGTGGTGGCCGAGAGAGTCCTTTACATGCCTAGCATGGGCTACTGCATCCTCTTCGTGCATGGACTAAGCAGGCTCTGCACGTGGCTGAACCGCTGCGGCGCCACCACCCTGATTGCATCCACGGTGTTGCTGCTGCTACTCTTCTCTTGGAAAACTGTGAAACAGAACGAAGTCTGGCTGTCGAGGGAGGCCCTGTTCAGGTCTGGAGTTGAGACTCTGCCCCACAATGCCAAGGTTCACTACAACTATGCCAACTTCCTGAAGGACCAGGGCCGGAACAGGGAAGCGATCTACCACTACAGGACTGCGCTCAAGTTGTACCCACGCCACGCGAGTGCCCTGAATAACCTGGGAACGCTGATGAGAGACACGGCCGAGGCAAAGCGCTACTACCAGCGGGCCCTGCAGCTCCATCCAAAGCACAGCCGTGCGCTCTTCAACCTCGGGAACCTCCTGAAGTCCCAGGAGAAAAAAGAAGAAGCTGTTGCCCTTTTGAAGGAGTCCATTAAATATGGTCCAGAATTTGCAGATGCATATTCAAGTTTAGCTTCATTATTGGCAGAGCAGGAAAGATTTAAGGAAGCTGAAGAAATATACCAGGCTGGTATAAAGAACTGCCCAGACAGCTCAGATTTACACAACAACTATGGAGTCTTCTTAGTTGATTCTGGGTCCCCTGAGAAGGCCGCAGCCCATTACCAGCAGGCTGTCATCCTCAGCCCTCATCACCACGTGGCCATGGTGAACCTGGGCAGACTCTACAGGTCGCTGGGTGAGAATGACATGGCTGAAGAATGGTACAAACGAGCCCTGCAGGTGGCCCGTGAAGCTGAGACCCTGTCTCCCTTGGGAGCACTCTACTACAACACCGGCCGCTATGAGGAGGCACTACAGGTGTACCACGAGGCTGTGGCACTCCAGCCCTTGCAGAGGGAGCTGCGTCTGGCACTGGCACAGGTTTTGGCAGTGATGGGCCAGACCAAAGAAGCTGAGAAGATGACCGAGCACATCGTATCAGAGGGGGCCGAGTGCCTGGAGTGCTACCGCCTCCTGTCGGCCATCTACAGCAAGCAGCAGGACCACGACAAGGCGCTCCATGCCATAGACAAGGCGCTCCAGCTGAAACCAAAGGACCCAAAAGTTGTATCAGAACTTTTTTTCACAAAAGGCAACCAACTAAGGGAGCAAAACCTTCTTGATAAAGCTTTTGAGAGCTACAACGCAGCTGTGGCTCTCAACCCAGAGCAGGCACAGGCCTGGATGAACATGGGTGGGATCCAGCATATCAAGGGAAAGTACATGTCTGCCAGAGCTTATTACGAGAGAGCCTTGCAGCTGGTTCCAGACAGCAAGCTGCTGAAGGAAAATCTCGCCAAATTAGATCGCCTAGAAAAGCGGTTACAGGAAGTTCGAGAAAAAGATCAGACATAG

Related Sequences

XP_004855120.1 Protein

Tmtc1 PREDICTED: transmembrane and TPR repeat-containing protein 1-like isoform X1 [Heterocephalus glaber]

Length: 793 aa      View alignments
>XP_004855120.1
MAENTSHKSYRPLCVLTFKLNILLTGMDPFYFHAVNVILHCLVTLVLMYTCDKAVFRSRGLAFATALLFAVHPVHTEAVAGIVGRADVLACLLFLLAFLSYSRGLDQCGTGGRLPPSASPFFLLLSLVLGTCAMLVKETGVTVFGVCLVYDFFSLPHKQDKLSLTASSDRNCLLTMRPFFKRAILVVSYVIIILYFRLWIMGGSMPLFSEQDNPASFSPYILTRFLTYSYLLAFNVWLLLAPVTLCYDWQVGSIPLVETIWDTRNLATVFLAVVMALLSLHCLAALKRLEHKEVLVGLLFLVFPFIPASNLFFRVGFVVAERVLYMPSMGYCILFVHGLSRLCTWLNRCGATTLIASTVLLLLLFSWKTVKQNEVWLSREALFRSGVETLPHNAKVHYNYANFLKDQGRNREAIYHYRTALKLYPRHASALNNLGTLMRDTAEAKRYYQRALQLHPKHSRALFNLGNLLKSQEKKEEAVALLKESIKYGPEFADAYSSLASLLAEQERFKEAEEIYQAGIKNCPDSSDLHNNYGVFLVDSGSPEKAAAHYQQAVILSPHHHVAMVNLGRLYRSLGENDMAEEWYKRALQVAREAETLSPLGALYYNTGRYEEALQVYHEAVALQPLQRELRLALAQVLAVMGQTKEAEKMTEHIVSEGAECLECYRLLSAIYSKQQDHDKALHAIDKALQLKPKDPKVVSELFFTKGNQLREQNLLDKAFESYNAAVALNPEQAQAWMNMGGIQHIKGKYMSARAYYERALQLVPDSKLLKENLAKLDRLEKRLQEVREKDQT