Sequence details NCBI ID: XM_004854932.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Trpc3
Gene Name transient receptor potential cation channel, subfamily C, member 3, transcript variant X1
Entrez Gene ID 101719053

Database interlinks

Part of NW_004624777.1 (Scaffold)

For more information consult the page for NW_004624777.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

Trpc3 ENSCPOG00000001231 (Guinea pig)

Gene Details

Cavia porcellus transient receptor potential cation channel, subfamily C, member 3 (Trpc3), mRNA.

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000001112, Guinea pig)

Protein Percentage 98.44%
CDS Percentage 94.62%
Ka/Ks Ratio 0.02884 (Ka = 0.007, Ks = 0.2415)

TRPC3 ENSG00000138741 (Human)

Gene Details

transient receptor potential cation channel, subfamily C, member 3

External Links

Gene Match (Ensembl Protein ID: ENSP00000368966, Human)

Protein Percentage 97.7%
CDS Percentage 92.98%
Ka/Ks Ratio 0.0386 (Ka = 0.0119, Ks = 0.3096)

Trpc3 ENSMUSG00000027716 (Mouse)

Gene Details

transient receptor potential cation channel, subfamily C, member 3

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000029271, Mouse)

Protein Percentage 94.18%
CDS Percentage 87.33%
Ka/Ks Ratio 0.04237 (Ka = 0.029, Ks = 0.684)

Trpc3 ENSRNOG00000016070 (Rat)

Gene Details

transient receptor potential cation channel, subfamily C, member 3 (Trpc3), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000046270, Rat)

Protein Percentage 93.32%
CDS Percentage 86.08%
Ka/Ks Ratio 0.05325 (Ka = 0.0385, Ks = 0.7228)

Genome Location

Sequence Coding sequence

Length: 2745 bp    Location: 2232449..2154917   Strand: -
Raw sequence   
>XM_004854932.1
ATGTCCACCAAGGTCAGGAAGTGCAAGGAGCAGGCGAGGGTGACCTTCCCCGCGCCGGAGGAGCAGGAGGAGGACGAAGGGGAGGACGAGAGCGCGGAGCCGCAGCGCCGCCTCCGCCGGGGCTGGAGGGACGTCAACGGGGGGCTCGAGCCACCCCGCTCCTGCCCGCCGCCCCGCTCCCCGGGCCCGGACGAGTTCATGGAGGGAAGTCCATCCCTGAGGCGCATGACGGTGATGCGGGAGAAGGGCCGGCGCCAGGCGGTCCGGGGTCCAGCCTTCATGTTCAACGACCGGGGCACCAGCCTCACGGCCGAGGAGGAGCGCTTCCTCGACGCCGCCGAGTACGGCAACATCCCAGTGGTGCGCAAGATGCTGGAGGAGTCCAAGACGCTGAACGTCAACTGCGTGGACTACATGGGCCAGAACGCACTGCAGCTGGCCGTGGGCAACGAGCACCTGGAGGTGACCGAGCTGCTGCTCAAGAAGGAGAACCTGGCGCGCATCGGCGACGCCTTGCTGCTGGCCATTAGCAAGGGCTACGTGCGCATTGTGGAGGCCATCCTCAACCACCCCGGCTTCGCCGCCACCAAGCGCCTCACCCTGAGTCCCTGCGAGCAGGAGCTGCAGGACGACGACTTCTACGCCTACGACGAGGACGGCACGCGCTTCTCTCCGGATATCACGCCCATCATCCTGGCGGCGCACTGCCAGAAGTACGAGGTGGTGCACATGCTGCTGATGAAGGGCGCCAGGATCGAGCGGCCGCATGACTACTTCTGCAAGTGCGGGGACTGCACAGAGAAGCAGCGGCACGACTCCTTCAGCCACTCGCGCTCGAGGATCAACGCCTACAAGGGGCTGGCCAGCCCGGCGTACCTGTCCCTGTCCAGCGAGGACCCGGTGCTCACGGCCCTGGAGCTCAGCAATGAGCTGGCCAAGCTGGCCAACATCGAGAAGGAGTTCAAGAATGACTACAGGAAGCTGTCCATGCAATGCAAAGACTTCGTAGTGGGTGTGCTGGATCTTTGCCGGGACTCAGAAGAAGTAGAAGCCATTCTGAATGGAGACCTGGAATCCACAGAACCTCTGGAAGTGCATAGGCATAAAGCTTCATTGAGTCGTGTCAAACTTGCCATTAAGTATGAGGTAAAAAAGTTTGTAGCTCACCCCAACTGCCAGCAGCAGCTTTTGACGATTTGGTATGAAAACCTCTCAGGCCTTCGGGAACAGACCATTGCAATCAAGTGTCTGGTTGTGCTGGTGGTGGCCTTGGGTCTTCCATTTCTCGCCATTGGCTATTGGATTGCACCTTGCAGCAGGCTGGGGAAAATCCTGCGAAGCCCTTTCATGAAGTTTGTGGCACATGCCGCTTCGTTCATCATCTTCCTGGGCCTGCTGGTGTTCAATGCCTCCGACAGGTTTGAAGGGATTGCCACACTGCCCAACATCACCGTCATTGACTACCCCAAACAGATCTTCAGAGTGAAGACCACCCAGTTCACATGGACCGAAATGCTCATTATGGTCTGGGTTCTTGGAATGATGTGGTCTGAGTGTAAGGAGCTCTGGCTGGAAGGACCTAGAGAATATATTTTGCAGTTGTGGAATGTTCTTGACTTTGGGATGCTTTCCATCTTCATTGCTGCTTTCACAGCCAGATTCCTGGCTTTCCTGCAGGCAACTAAAGCCCAGCAGTATGTGGACAGTTATGTCCAAGAGAGTGACCTCAGTGAAGTCACACTCCCACCAGAGATACAGTATTTCACTTATGCTAGAGATAAATGGCTCCCTTCTGACCCTCAGATCATATCTGAAGGCCTTTACGCTATAGCTGTCGTGCTCAGCTTCTCTCGGATCGCGTATATCCTCCCTGCCAACGAGAGCTTTGGCCCCTTACAGATCTCTCTTGGAAGGACTGTGAAGGACATATTCAAGTTCATGGTCCTCTTTATTATGGTGTTTCTGGCATTTATGATTGGCATGTTCATACTTTATTCTTACTACCTTGGGGCCAAAGTAAATGCTGCTTTTACCACTGTAGAAGAAAGTTTCAAGACTTTGTTTTGGTCAATATTTGGGTTGTCTGAAGTGACTTCAGTTGTGCTCAAGTACGATCACAAATTCATAGAGAATATTGGATACGTTCTTTATGGAATATACAATGTAACTATGGTGGTCGTTTTACTCAACATGTTAATTGCTATGATTAATAGCTCATATCAAGAAATTGAGGATGACAGTGATGTAGAATGGAAGTTTGCGCGTTCAAAACTCTGGTTATCCTATTTTGATGATGGAAAAACATTACCTCCACCCTTCAGTCTGGTTCCCAGTCCAAAATCCTTTGTTTATTTCATCATGCGGATCATTAACTTTTCCAAATGCAGAAGGAGAAGGCTGCAGAAGGATCTGGAGATGGGACTGGGTAACTCAAAGTCTAGGTTAAACCTCTTCACTCAGTCTAACTCAAGAGTTTTTGAATCACACAGTTTTAACAGCATTCTCAATCCGCCAACACGTTATCAGCAGATAATGAAAAGACTTATAAAGCGGTATGTTTTGAAAGCACAAGTAGACAAAGAAAATGATGAAGTTAATGAAGGTGAATTAAAAGAAATCAAGCAGGATATCTCCAGCCTTCGTTATGAGCTTTTGGAAGACAAGAGCCAAGCAACCGAGGAATTAGCCATTTTAATTCATAAACTGAGTGAGAAACTGAACCCCAGCCTGCTGAGATGTGAATGA

Related Sequences

XP_004854989.1 Protein

Trpc3 PREDICTED: short transient receptor potential channel 3 isoform X1 [Heterocephalus glaber]

Length: 914 aa      View alignments
>XP_004854989.1
MSTKVRKCKEQARVTFPAPEEQEEDEGEDESAEPQRRLRRGWRDVNGGLEPPRSCPPPRSPGPDEFMEGSPSLRRMTVMREKGRRQAVRGPAFMFNDRGTSLTAEEERFLDAAEYGNIPVVRKMLEESKTLNVNCVDYMGQNALQLAVGNEHLEVTELLLKKENLARIGDALLLAISKGYVRIVEAILNHPGFAATKRLTLSPCEQELQDDDFYAYDEDGTRFSPDITPIILAAHCQKYEVVHMLLMKGARIERPHDYFCKCGDCTEKQRHDSFSHSRSRINAYKGLASPAYLSLSSEDPVLTALELSNELAKLANIEKEFKNDYRKLSMQCKDFVVGVLDLCRDSEEVEAILNGDLESTEPLEVHRHKASLSRVKLAIKYEVKKFVAHPNCQQQLLTIWYENLSGLREQTIAIKCLVVLVVALGLPFLAIGYWIAPCSRLGKILRSPFMKFVAHAASFIIFLGLLVFNASDRFEGIATLPNITVIDYPKQIFRVKTTQFTWTEMLIMVWVLGMMWSECKELWLEGPREYILQLWNVLDFGMLSIFIAAFTARFLAFLQATKAQQYVDSYVQESDLSEVTLPPEIQYFTYARDKWLPSDPQIISEGLYAIAVVLSFSRIAYILPANESFGPLQISLGRTVKDIFKFMVLFIMVFLAFMIGMFILYSYYLGAKVNAAFTTVEESFKTLFWSIFGLSEVTSVVLKYDHKFIENIGYVLYGIYNVTMVVVLLNMLIAMINSSYQEIEDDSDVEWKFARSKLWLSYFDDGKTLPPPFSLVPSPKSFVYFIMRIINFSKCRRRRLQKDLEMGLGNSKSRLNLFTQSNSRVFESHSFNSILNPPTRYQQIMKRLIKRYVLKAQVDKENDEVNEGELKEIKQDISSLRYELLEDKSQATEELAILIHKLSEKLNPSLLRCE