Details from NCBI annotation

Gene Symbol Prdm5
Gene Name PR domain containing 5, transcript variant X2
Entrez Gene ID 101714200

Database interlinks

Part of NW_004624777.1 (Scaffold)

For more information consult the page for NW_004624777.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

PRDM5 ENSCPOG00000012883 (Guinea pig)

Gene Details

PR domain containing 5

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000011596, Guinea pig)

Protein Percentage 96.25%
CDS Percentage 93.06%
Ka/Ks Ratio 0.05842 (Ka = 0.0168, Ks = 0.2876)

PRDM5 ENSG00000138738 (Human)

Gene Details

PR domain containing 5

External Links

Gene Match (Ensembl Protein ID: ENSP00000264808, Human)

Protein Percentage 96.66%
CDS Percentage 93.16%
Ka/Ks Ratio 0.04921 (Ka = 0.0153, Ks = 0.3107)

Prdm5 ENSMUSG00000029913 (Mouse)

Gene Details

PR domain containing 5

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000031976, Mouse)

Protein Percentage 92.49%
CDS Percentage 87.26%
Ka/Ks Ratio 0.05429 (Ka = 0.0358, Ks = 0.6594)

Prdm5 ENSRNOG00000023679 (Rat)

Gene Details

Protein Prdm5

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000009569, Rat)

Protein Percentage 91.25%
CDS Percentage 85.99%
Ka/Ks Ratio 0.064 (Ka = 0.0445, Ks = 0.6946)

Genome Location

Sequence Coding sequence

Length: 1800 bp    Location: 893238..676635   Strand: -
>XM_004854921.1
ATGCTGGGGATGTACGTGCCAGACAGGTTCTCCCTGAAGTCCTCCCGGGTGCAGGACGGAATGGGGCTCTACACAGCCAGAAGAGTGCGAAAGGGTGAAAAGTTTGGACCTTTTGCTGGAGAGAAGAGGATGCCTGAAGACTTGGATGAAAATATGGACTACAGGCTGATGTGGGAGGTTCGTGGGAGTAAGGGAGAAGTTCTGTACATCTTGGATGCTACCAACCCACGACACTCCAACTGGCTTCGCTTTGTTCATGAGGCACCATCTCAGGAGCAGAAGAACTTGGCTGCAATTCAAGAAGGAGAAAACATTTTCTACTTGGCAGTTGAAGATATAGAAACAGATACAGAACTTCTGATTGGTTACCTGGACAGTGACATGGAGGCTGATGAGGAGGAACAGCAGATTATGACAGTGATCAAAGAAGGGAAAATTGAAAATTCTAAAGGACAATCAGCAGCTGGCAGAAAAGATGCCCATGGCTGTGAAAAGGACTATGCCTGTCCACAGTGTGAATCGAGCTTTGCCAGTGAGGAGATTCTTGCTGAGCATCTCCAAACTTTGCACCAAAAGCCTACAGAGGAGAAAGAATTTAAGTGCAAGAACTGTGGGAAGAAATTCCCAGTTAAGCAGGCTTTGCAAAGACATTTTGAGCAGCACCAGGTGACCTGCCGGGGAGATGACAGGTTCGTGTGCAAGGCTGACAGCTGTGGGAAGAGGCTGAAGAGTAGGGATGCCCTGAAGAGACACCAGGAAAATGTCCACTCGGGAGACACTAAGAAAAAGCTCATATGTTCAGTGTGCAATAAAAAGTGCTCCTCAGCATCAAGCCTACAGGAACATAGAAAGATTCATGAGATATTTGACTGTCAAGAATGTATGAAGAAATTTATTTCAGCTAATCAGCTGAAACGTCATATGATCACCCACTCAGAAAAACGACCCTATAATTGTGAGATTTGTAATAAATCTTTCAAGAGGCTTGATCAAGTGGGGGCCCACAAAGTAATCCACAGTGAAGATAAGCCTTACAAATGCAAACTTTGTGGCAAAGGATTTGCTCACAGAAATGTTTACAAGAATCACAAGAAGACTCACTCTGAAGAGAGACCGTTCCAGTGTGATGAATGTAAAGCTTTGTTCCGGACCCCATTTTCTTTGCAGAGACACCTGCTAATACATAACAGTGAGAGGACTTTCAAGTGTCATCATTGTGATGCTACCTTTAAAAGGAAAGACACATTAAATGTTCACATCCAGGTAGTCCATGAAAGACACAAGAAGTACAGGTGTGAACTATGTAATAAGGCATTTGTTACGCCATCTGTGCTCAGAAGTCATAAGAAAACACATACAGGAGAAAAGGAGAAAGTCTGCCCATATTGTGGCCAGAAATTTGCCAGCAGTGGGACACTGCGAGTTCACATCCGGAGCCACACAGGTGAGCGTCCCTATCAATGTCCTTACTGTGAAAAAGGATTCAGTAAAAATGATGGACTCAAGATGCATATTCGTACACATACCAGGGAGAAGCCCTACAAATGCTCAGAGTGCAGCAAAGCCTTCAGCCAGAAGCGGGGCCTGGATGAGCATAAGAGGACTCACACTGGAGAAAAGCCTTTCCAGTGTGATGTTTGTGACTTGGCTTTTAGCCTGAAGAAAATGCTGATCCGACACAAGATGACTCATAATCCCAATCGTCCACTGGCAGAGTGCCAGTTTTGCCATAAGAAGTTTACAAGGAATGACTACCTCAAAGTGCATATGGACAATATCCATGGTGTAGCTGACAGCTAA

Related Sequences

XP_004854978.1 Protein

Prdm5 PREDICTED: PR domain zinc finger protein 5 isoform X2 [Heterocephalus glaber]

Length: 599 aa      View alignments
>XP_004854978.1
MLGMYVPDRFSLKSSRVQDGMGLYTARRVRKGEKFGPFAGEKRMPEDLDENMDYRLMWEVRGSKGEVLYILDATNPRHSNWLRFVHEAPSQEQKNLAAIQEGENIFYLAVEDIETDTELLIGYLDSDMEADEEEQQIMTVIKEGKIENSKGQSAAGRKDAHGCEKDYACPQCESSFASEEILAEHLQTLHQKPTEEKEFKCKNCGKKFPVKQALQRHFEQHQVTCRGDDRFVCKADSCGKRLKSRDALKRHQENVHSGDTKKKLICSVCNKKCSSASSLQEHRKIHEIFDCQECMKKFISANQLKRHMITHSEKRPYNCEICNKSFKRLDQVGAHKVIHSEDKPYKCKLCGKGFAHRNVYKNHKKTHSEERPFQCDECKALFRTPFSLQRHLLIHNSERTFKCHHCDATFKRKDTLNVHIQVVHERHKKYRCELCNKAFVTPSVLRSHKKTHTGEKEKVCPYCGQKFASSGTLRVHIRSHTGERPYQCPYCEKGFSKNDGLKMHIRTHTREKPYKCSECSKAFSQKRGLDEHKRTHTGEKPFQCDVCDLAFSLKKMLIRHKMTHNPNRPLAECQFCHKKFTRNDYLKVHMDNIHGVADS