Details from NCBI annotation

Gene Symbol Pspc1
Gene Name paraspeckle component 1
Entrez Gene ID 101714198

Database interlinks

Part of NW_004624776.1 (Scaffold)

For more information consult the page for NW_004624776.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

PSPC1 ENSCPOG00000000395 (Guinea pig)

Gene Details

paraspeckle component 1

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000000346, Guinea pig)

Protein Percentage 98.85%
CDS Percentage 95.64%
Ka/Ks Ratio 0.03243 (Ka = 0.0053, Ks = 0.1647)

PSPC1 ENSG00000121390 (Human)

Gene Details

paraspeckle component 1

External Links

Gene Match (Ensembl Protein ID: ENSP00000343966, Human)

Protein Percentage 97.5%
CDS Percentage 93.46%
Ka/Ks Ratio 0.04558 (Ka = 0.0116, Ks = 0.2538)

Pspc1 ENSMUSG00000021938 (Mouse)

Gene Details

paraspeckle protein 1

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000022507, Mouse)

Protein Percentage 96.72%
CDS Percentage 91.91%
Ka/Ks Ratio 0.04453 (Ka = 0.015, Ks = 0.3376)

Pspc1 ENSRNOG00000020782 (Rat)

Gene Details

paraspeckle component 1 (Pspc1), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000028219, Rat)

Protein Percentage 96.53%
CDS Percentage 92.1%
Ka/Ks Ratio 0.04893 (Ka = 0.0159, Ks = 0.3247)

Genome Location

Sequence Coding sequence

Length: 1563 bp    Location: 17906712..17978104   Strand: +
>XM_004854893.1
ATGATGTTAAGAGGAAACCTGAAGCAAGTGCGCATTGAGAAGAACCCGGCCCGCCTTCGCGCGCTCGAGTCCGCGGCGGGCGACAGCGAGCCTGCGGCCATGGCGCTGGCGCTGGCGGGAGAGCAGGCGCCGCCCGCCCCCGTGGCCCCGGAGGACCGCCCGGAGGAGGAGATGGGCTTCACCATCGACATTAAGAGCTTCCTTAAGCCGGGAGAGAAGACGTACACGCAGCGCTGCCGCCTGTTCGTGGGGAACCTGCCCACCGACATCACCGAGGAGGACTTCAAGCGGCTCTTCGAGCGCTATGGCGAGCCCAGCGAGGTCTTCATCAACCGGGACCGCGGTTTCGGCTTCATCCGCCTGGAATCCAGAACACTGGCTGAAATTGCAAAAGCAGAACTGGATGGCACCATTTTGAAGAGCAGACCCCTGCGAATTCGCTTTGCTACACATGGAGCAGCTCTAACTGTCAAGAACCTTTCTCCTGTTGTTTCCAATGAGCTTCTAGAGCAAGCATTTTCCCAGTTTGGTCCAGTAGAGAAAGCCGTTGTGGTTGTGGATGATCGTGGTAGAGCTACCGGAAAAGGTTTTGTAGAATTTGCAGCAAAACCTCCTGCACGAAAGGCTCTGGAGAGATGTGGTGATGGGGCGTTCTTGCTAACAACGACCCCTCGTCCTGTCATTGTGGAGCCTATGGAGCAGTTTGATGATGAAGATGGCTTGCCAGAGAAGCTAATGCAGAAAACTCAGCAATATCATAAGGAAAGAGAACAGCCACCACGCTTTGCTCAACCTGGGACATTTGAATTTGAGTATGCATCTCGATGGAAGGCTCTTGATGAAATGGAAAAGCAGCAGCGTGAGCAGGTTGATAGAAACATCAGAGAAGCCAAAGAGAAACTGGAGGCAGAAATGGAAGCAGCTAGGCATGAACACCAGTTAATGCTAATGAGGCAAGATCTAATGAGACGTCAGGAAGAACTCAGACGCTTGGAAGAACTCAGAAACCAAGAGCTGCAAAAACGGAAGCAAATACAACTTAGACATGAAGAAGAACATCGTCGTCGTGAGGAAGAAATGATCAGACACAGAGAACAGGAGGAATTGAGACGACAGCAAGAAGGCTTTAAACCAAACTATATGGAAAATAGAGAACAGGAAATGAGAATGGGTGATATGGGTCCCCGTGGAGCAATAAACATGGGAGATGCGTTTAGCCCAGCACCTGCTGGTAACCAAGGTCCTCCTCCAATGATGGGTATGAATATGAACAACAGAGGAACTATACCTGGCCCACCAATGGGTCCTGGTCCTGCCATGGGACCAGAAGGAGCTGCAAATATGGGAACTCCAATGATGCCAGATAATGGAGCAGTGCACAATGATAGATTTTCCCAAGGACCACCCTCCCAGATGGGCTCTCCCATGGGGAGTAGAGCAAGTTCTGAGACCCCTCAAGCACCAATGACTGGTGTGGGTCCCGTGAGTGGTGGTCCTGGTGGCTTTGGTAGAGGCAGTCAAGGGGGCACCTTCGAAGGTCCTAATAAGCGTCGTAGATACTAA

Related Sequences

XP_004854950.1 Protein

Pspc1 PREDICTED: paraspeckle component 1 [Heterocephalus glaber]

Length: 520 aa      View alignments
>XP_004854950.1
MMLRGNLKQVRIEKNPARLRALESAAGDSEPAAMALALAGEQAPPAPVAPEDRPEEEMGFTIDIKSFLKPGEKTYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATHGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFDDEDGLPEKLMQKTQQYHKEREQPPRFAQPGTFEFEYASRWKALDEMEKQQREQVDRNIREAKEKLEAEMEAARHEHQLMLMRQDLMRRQEELRRLEELRNQELQKRKQIQLRHEEEHRRREEEMIRHREQEELRRQQEGFKPNYMENREQEMRMGDMGPRGAINMGDAFSPAPAGNQGPPPMMGMNMNNRGTIPGPPMGPGPAMGPEGAANMGTPMMPDNGAVHNDRFSQGPPSQMGSPMGSRASSETPQAPMTGVGPVSGGPGGFGRGSQGGTFEGPNKRRRY