Sequence details NCBI ID: XM_004854874.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Ift88
Gene Name intraflagellar transport 88 homolog (Chlamydomonas), transcript variant X2
Entrez Gene ID 101707870

Database interlinks

Part of NW_004624776.1 (Scaffold)

For more information consult the page for NW_004624776.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

IFT88 ENSCPOG00000009162 (Guinea pig)

Gene Details

intraflagellar transport 88 homolog (Chlamydomonas)

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000008226, Guinea pig)

Protein Percentage 97.21%
CDS Percentage 94.71%
Ka/Ks Ratio 0.06027 (Ka = 0.0127, Ks = 0.2111)

IFT88 ENSG00000032742 (Human)

Gene Details

intraflagellar transport 88 homolog (Chlamydomonas)

External Links

Gene Match (Ensembl Protein ID: ENSP00000323580, Human)

Protein Percentage 90.53%
CDS Percentage 91.95%
Ka/Ks Ratio 0.17418 (Ka = 0.0454, Ks = 0.2607)

Ift88 ENSMUSG00000040040 (Mouse)

Gene Details

intraflagellar transport 88

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000113768, Mouse)

Protein Percentage 95.39%
CDS Percentage 89.7%
Ka/Ks Ratio 0.04423 (Ka = 0.022, Ks = 0.4968)

Ift88 ENSRNOG00000009278 (Rat)

Gene Details

intraflagellar transport 88 homolog (Chlamydomonas) (Ift88), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000012988, Rat)

Protein Percentage 92.26%
CDS Percentage 86.65%
Ka/Ks Ratio 0.07414 (Ka = 0.0456, Ks = 0.6154)

Genome Location

Sequence Coding sequence

Length: 2478 bp    Location: 17081148..16954499   Strand: -
Raw sequence   
>XM_004854874.1
ATGATGCAAAATGTGCACCTGGCTCCAGAGACTGATGAAGATGATCTTTATTCTGGATATAATGACTACAACCCAACCTATGATACCGAGGAATTGGAGAATGATACAGGTTTTCAGCAAGCAGTGAGGACTAGTCATGGCAGAAGACCTCCAGTAACTGCTAAAATACCAAGCACGGCAGTTACTAGACCTATAGCTACTGGATATGGGTCTAAGACATCCTTGATGTCATCAATGGGAAGACTGATGACAGGAGCTATTCAGGATGGAGTTACTAGACCCATGACAGCAGTGAGAGCAGCTGGGTTTACCAAAGCAGCTTTGAGAGGTTCTGCATTTGACCCCCTTGGTCAATCAAGGGGCCCTGCTCCTCCTTTGGAAACCAAAAATGAAGATAGTCCAGAAGAAAAGATCAGGCAATTAGAGAAGAAAGTAAATGAATTGGTAGAAGAAAGCTGTATTGCCAACAGTTGTGGAGACTTAAAATTGGCCTTAGAAAAGGCTAAAGATGCAGGAAGAAAAGAGAGAGTCCTGGTGCGACAACGAGAACAACTTACAACTCCAGAAAATATCAATTTGGATTTGACTTACTCAGTTCTCTTCAACTTGGCCAGTCAGTATTCAGCTAATGAAATGTATGCTGAAGCACTAAACACATATCAAGTAATAGTGAAAAATAAGATGTTTAGCAATTCAGGAAGATTGAAAGTGAATATGGGAAACATTTATTTAAAGCAAAGAAATTATTCCAAAGCCATTAAATTCTACCGAATGGCCTTGGATCAAATCCCAAGTGTCCATAAAGAAATGAGGATTAAAATAATGCAGAATATTGGAGTTACATTTATTAAAACTGGTCAGTATTCAGATGCCATTAATTCATTTGAGCACATAATGAGTATGGCACCAAATCTGAAGGCAGGCTTCAACCTAATTCTTAGTTATTTTGCCATTGGAGACCGAGAAAAAATGAAGAAGGCATTTCAAAAACTGATTGCTGTCCCATTAGAAATTGATGATGATGATAAATATATTTCACCAACGGATGATCCTCATACTAACTTAGTGATTGAAGCTATAAAAAATGATCATCTCAGGCAAATGGAACGTGAAAGGAAAGCCATGGCAGAAAAATACATCATGACAGCTGCAAAACTTATTGCTCCTGTGATTGAGACATCTTTTGCTGTGGGTTATGACTGGTGTGTGGAGGTTGTGAAAGCTTCTCAGTATGTGGAGCTAGCCAATGATCTGGAAATAAACAAAGCAATTACATACTTGAGACAAAAAGACTTTAACCAAGCTGTTGACACCTTAAAAATGTTTGAAAAGAAGGACAGCAGGGTAAAAAGTGCAGCTGCAACCAACCTCTCATTCCTGTACTATCTGGAAAATGAATTTGCACAGGCCAGCAGCTATGCAGATCTAGCTGTGAACTCTGATAGATATAACCCATCAGCTCTTACTAATAAAGGGAATACAGTCTTTGCAAATGCTGATTATGAGAAGGCAGCTGAATTCTATAAAGAGGCTCTAAGAAATGATTCTTCTTGTACTGAAGCCCTTTATAATATTGGCCTTACCTATAAGAAGCTCAACCGGCTAGATGAGGCTTTGGAGTGTTTCCTGAAACTTCATGCAATTCTGCGAAATAGTGCCCAAGTGCTTTACCAGATAGCAAATATACATGAATTAATGGAAGATCCCAATCAGGCTATCGAATGGCTAATGCAGCTGATCAGCGTTGTTCCAACTGATTCTAAAGCTTTGTCTAAACTAGGAGAATTATATGATAGTGAAGGAGACAAATCCCAGGCATTCCAATATTACTATGAGTCATATAGGTATTTCCCTTCTAATATTGAAGTCATTGAGTGGCTTGGAGCCTATTACATTGACACTCAGTTTTGTGAAAAAGCCATTCAGTACTTTGAAAGAGCTTCTCTTATACAGCCTACACAAGTGAAATGGCAGCTGATGGTAGCAAGTTGTTTTAGAAGAAGTGGTAACTACCAAAAAGCATTAGATACTTATAAAGATATTCACAGAAAATTTCCAGAAAATGTTGACTGTCTGCGCTTCTTGGTTCGTCTCTGCACAGATATTGGATTAAAAGAAGTTCAAGAATATGCCACAAAACTCAAGAGGTTGGAAAAAATGAAAGAAATAAGGGAACAGCGCATAAAGTCGGGCAGAGATGGCAGTGGGACCTCCCGTGGCAAAAGAGAGGGGAGTGCTGGTAGTGATAGTGGCCAGAACAGTAGTGCCAGTAGTAAAGGTGAACGACTAAGTGCCAAACTCAGAGCTTTACCTGGGACAAATGAACCTTATGAAAGTAGCAGTAACAAAGAAATAGATGCATCCTATGTGGATCCACTTGGCCCTCAAATAGAAAGACCAAAAACTGCAGCCAAAAAAAGAATCGAAGAGGATGATTTTGCGGATGAAGAGTTGGGAGATGACTTGCTTCCAGAATAA

Related Sequences

XP_004854931.1 Protein

Ift88 PREDICTED: intraflagellar transport protein 88 homolog isoform X2 [Heterocephalus glaber]

Length: 825 aa      View alignments
>XP_004854931.1
MMQNVHLAPETDEDDLYSGYNDYNPTYDTEELENDTGFQQAVRTSHGRRPPVTAKIPSTAVTRPIATGYGSKTSLMSSMGRLMTGAIQDGVTRPMTAVRAAGFTKAALRGSAFDPLGQSRGPAPPLETKNEDSPEEKIRQLEKKVNELVEESCIANSCGDLKLALEKAKDAGRKERVLVRQREQLTTPENINLDLTYSVLFNLASQYSANEMYAEALNTYQVIVKNKMFSNSGRLKVNMGNIYLKQRNYSKAIKFYRMALDQIPSVHKEMRIKIMQNIGVTFIKTGQYSDAINSFEHIMSMAPNLKAGFNLILSYFAIGDREKMKKAFQKLIAVPLEIDDDDKYISPTDDPHTNLVIEAIKNDHLRQMERERKAMAEKYIMTAAKLIAPVIETSFAVGYDWCVEVVKASQYVELANDLEINKAITYLRQKDFNQAVDTLKMFEKKDSRVKSAAATNLSFLYYLENEFAQASSYADLAVNSDRYNPSALTNKGNTVFANADYEKAAEFYKEALRNDSSCTEALYNIGLTYKKLNRLDEALECFLKLHAILRNSAQVLYQIANIHELMEDPNQAIEWLMQLISVVPTDSKALSKLGELYDSEGDKSQAFQYYYESYRYFPSNIEVIEWLGAYYIDTQFCEKAIQYFERASLIQPTQVKWQLMVASCFRRSGNYQKALDTYKDIHRKFPENVDCLRFLVRLCTDIGLKEVQEYATKLKRLEKMKEIREQRIKSGRDGSGTSRGKREGSAGSDSGQNSSASSKGERLSAKLRALPGTNEPYESSSNKEIDASYVDPLGPQIERPKTAAKKRIEEDDFADEELGDDLLPE