Details from NCBI annotation

Gene Symbol unclassified transcription discrepancy
Gene Name mRNA
Entrez Gene ID 101698516

Database interlinks

Part of NW_004624775.1 (Scaffold)

For more information consult the page for NW_004624775.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

GGPS1 ENSCPOG00000001696 (Guinea pig)

Gene Details

geranylgeranyl diphosphate synthase 1

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000001530, Guinea pig)

Protein Percentage 99.0%
CDS Percentage 96.88%
Ka/Ks Ratio 0.04513 (Ka = 0.0048, Ks = 0.1058)

GGPS1 ENSG00000152904 (Human)

Gene Details

geranylgeranyl diphosphate synthase 1

External Links

Gene Match (Ensembl Protein ID: ENSP00000282841, Human)

Protein Percentage 94.98%
CDS Percentage 92.87%
Ka/Ks Ratio 0.0993 (Ka = 0.0241, Ks = 0.2431)

Ggps1 ENSMUSG00000021302 (Mouse)

Gene Details

geranylgeranyl diphosphate synthase 1

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000126603, Mouse)

Protein Percentage 92.64%
CDS Percentage 87.63%
Ka/Ks Ratio 0.07229 (Ka = 0.0373, Ks = 0.516)

Ggps1 ENSRNOG00000016767 (Rat)

Gene Details

geranylgeranyl diphosphate synthase 1 (Ggps1), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000022483, Rat)

Protein Percentage 92.98%
CDS Percentage 88.41%
Ka/Ks Ratio 0.07063 (Ka = 0.0347, Ks = 0.4912)

Genome Location

Sequence Coding sequence

Length: 900 bp    Location: 15152226..15141344   Strand: -
>XM_004854624.1
ATGGAGAAGACTCAAGAAAATGTCCAAAGAATTCTTCTAGAGCCCTACAGGTACTTACTTCAATTACCAGGTAAGCAAGTGAGAACAAAACTTTCACAGGCATTTAATCATTGGCTGAAAGTTCCAGAAGACAAACTACAGATTATCATCGAAGTGACAGAAATGTTGCATAATGCCAGTTTACTCATTGATGATATTGAGGATAATTCAAAACTCCGACGTGGCTTTCCTGTAGCACACAGCATCTACGGGATTCCATCTGTCATCAATTCTGCCAATTATGTTTATTTCCTTGGCTTAGAGAAAGTCTTAACCCTTGACCACCCAGATGCAGTGAAGCTTTTTACCTGCCAGCTTTTGGAACTCCACCAGGGACAAGGCCTAGATATTTACTGGAGGGATAATTACATTTGTCCCACTGAAGAAGAATATAAAACCATGGTGCTGCAGAAGACAGGTGGACTGTTTGGATTAGCAGTAGGTCTCATGCAGTTGTTCTCTGACTACAAAGAAGATTTAAAACCACTGCTTAATACACTTGGGCTCTTTTTCCAAATTAGAGATGATTATGCCAATCTCCACTCCAAAGAATATAGTGAAAACAAAAGTTTTTGTGAAGATCTGACGGAAGGAAAGTTCTCATTTCCTACTATTCATGCTATTCGGTCGAGACCTGAAAGCACCCAGGTGCAGAACATCTTGCACCAGAGAACAGAAAACATAGATATTAAAAAATACTGTGTCCAGTATCTTGAGGATGTAGGTTCTTTTGAATATACTCGGAATACTCTTAGAGAGCTAGAATCTGAAGCCTATAAACAAATTGAGGCATGTGGTGGAAACCCTGAGCTAGTAGCTTTAGTAAGGCACTTAGGTAAGATGTTCAAAGAAGAAAATTAA

Related Sequences

XP_004854681.1 Protein

unclassified transcription discrepancy PREDICTED: LOW QUALITY PROTEIN: geranylgeranyl pyrophosphate synthase [Heterocephalus glaber]

Length: 299 aa      View alignments
>XP_004854681.1
MEKTQENVQRILLEPYRYLLQLPGKQVRTKLSQAFNHWLKVPEDKLQIIIEVTEMLHNASLLIDDIEDNSKLRRGFPVAHSIYGIPSVINSANYVYFLGLEKVLTLDHPDAVKLFTCQLLELHQGQGLDIYWRDNYICPTEEEYKTMVLQKTGGLFGLAVGLMQLFSDYKEDLKPLLNTLGLFFQIRDDYANLHSKEYSENKSFCEDLTEGKFSFPTIHAIRSRPESTQVQNILHQRTENIDIKKYCVQYLEDVGSFEYTRNTLRELESEAYKQIEACGGNPELVALVRHLGKMFKEEN