Sequence details NCBI ID: XM_004854430.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Synpo
Gene Name synaptopodin, transcript variant X3
Entrez Gene ID 101726425

Database interlinks

Part of NW_004624774.1 (Scaffold)

For more information consult the page for NW_004624774.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

SYNPO ENSCPOG00000013695 (Guinea pig)

Gene Details

synaptopodin

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000012333, Guinea pig)

Protein Percentage 86.64%
CDS Percentage 87.67%
Ka/Ks Ratio 0.20257 (Ka = 0.0746, Ks = 0.3682)

SYNPO ENSG00000171992 (Human)

Gene Details

synaptopodin

External Links

Gene Match (Ensembl Protein ID: ENSP00000377789, Human)

Protein Percentage 84.36%
CDS Percentage 84.99%
Ka/Ks Ratio 0.17873 (Ka = 0.0896, Ks = 0.5013)

Synpo ENSMUSG00000043079 (Mouse)

Gene Details

synaptopodin

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000095174, Mouse)

Protein Percentage 81.44%
CDS Percentage 81.07%
Ka/Ks Ratio 0.14149 (Ka = 0.1094, Ks = 0.7732)

Synpo ENSRNOG00000019181 (Rat)

Gene Details

synaptopodin (Synpo), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000025989, Rat)

Protein Percentage 67.0%
CDS Percentage 70.08%
Ka/Ks Ratio 0.27886 (Ka = 0.2736, Ks = 0.9811)

Genome Location

Sequence Coding sequence

Length: 2763 bp    Location: 9883532..9912722   Strand: +
Raw sequence   
>XM_004854430.1
ATGGAGGGGTACTCAGAGGAGGCCAGCTTGCTGCGGCACCTGGAGAAGGTGGCCAGTGAGGAGGAAGAGGTGCCACTGGTGGTATATTTGAAGGAGAACGCAGCCCTGCTGACAGCCAATGGGCTTCACCTGTCCCAGAACCGGGAGGCCCAGGAGTCCCCACCAACTCCTCCTCCAGCTGAGGTCCACAGTCCAGCTGCAGATGTCAACCAGAACCTGTCCTCACCCAGCACCACGATCACCACACCAGCTTCTAACAGCAACTGCAACCTGCTGGCCACAGACATCAATCAGAACCCTCCAGTAACTGTCATCCCACAGAGCCCTTCGCTTTCTGGGGTCCAGCAGAATTCTCCTGCTGCACAGAACATAACAAATGGCACAACACCTGAGTCCAAAACCAGCGCCCCATGTGCTGATGGGCCACCCCAGGCGCCGGTGGAGGAGGTGATATCCAGTGTACTCCTAATTGATAAGGTATCTACTCCACCGACTACTACCAGCACCTTCTATAGAGAAGCTACTCCCATCCCCAGCTCTGAGCCTCCAGGTCCAGACTTCATGTCCAGCTCCCTGCTCATCAACATCAAGCCCAGCACCCTAGTGATGTCAGCAGAGCCTGAGATGTCTGGGCGGGCACCTGCCACCACACCCACCAAGGTGTACAGTGAGGTCCACCTCACACTGGCCAAGCCTCTATCAGTGGTCAACAGGACGGCCAGGCCCTTTGGGATCCAGGCACTAGGGGGCACCAGCCAGATGGAGCAGAGTCCCATGGTGCAGAGGCGACATCTTGGGGAGAAAGCCCCGGCTCCCCAGCCCCCCAGCGTGGTAGACAGGAGTCCCCGGCCTCAGAGACATGTCATGTCCTACAGCCCCATGGTGGAGAGGAGGCTGGTGGGGCAGCGAAGCCCGGCCCTGGAGAGACGGCCCTTGGGGAACTTCACCCCTCCTCCCACCTACGCGGAGACCCTGTCCACAGCGCCCCCAGCTTCCCGGGTGCGGTCTCCCCCTTCTTATTCTGCCCTGTACCCTAGCTCTGACACCAAGCCTTCCCATCTGAAGGGCCAGGCAGTTCCCACCAGCAAGACGGGCATTTTAGAGGAGTCCATGGCCCGCCGGGGCAGCCGGAAATCCATGTTCACTTTCGTGGAGAAGCCCAAGGTGACCCCGAACCCAGACCTGCTGGATCTGGTCCAGACGGCCGACGAGAAGCGGAGGCAGAGGGACCAGGGGGACACGGGTGCAGAGGAGGAGCCCTTTGCGCTTGGGGCTGAGGCTTCCAACTTCCAGCAGGAGCCGGGCTCTCGGGAGAGAGCCAGTCCCGCGGCGGCCGAGGAGGCTGTCCCTGAGTGGGCCTCCTGCCTCAAGTCGCCTCGCATCCAAGCCAAGCCGAAGCCCAAACCCAACCAGAACCTCTCGGAGGCCTCTGGGAAGGGCGCGGAGCTCTACGCGCGCCGCCAGTCGCGGATGGAGAAGTACGTCATCGAGTCTTCGGGGCACGCTGAGCTGGCCCGCTGCCCTTCGCCCACCATGTCCCTGCCTTCCTCCTGGAAATACTCCACCAGTGCCCCTGGGGCCTTCCGAGTGGCGTCCCTGAGCCCCGCGCGGACCCCGCCGGCCTCCCTCTACCACGGCTACCTGCCTGAGAACGGCATCCTGCGCCCAGAGCCCACCAAGCAGCCGCCCTACCAGATGCGGCCTTCGCTCTTTGTCCTCTCGCCCATCAAGGAGCCCAGCAAGGCCTCAGCCCGAGCGCCACGAGCGGCCTCATCCAGAGCGGCCTCGGCCCGAGCTGCCTCCCCACGAGCTGCCTCCCCTGCCAAGCCGAGCTCCCTGGACCTGGTGCCCAGCCTTCCCAAAGCCGGGCTCCCGCTGTCTCCGGCTCTGCGTCGGCCCTGCCGCTCCTCGCCGGGCCTCTGCGCTTCCTCTGGCCAGGACGGCCTGCAGCCCACGGCTGTGAGCCCCACCTACAGCAGTGATGTCTCCCCCGTGTCTCCCTCCAGGGCGTGGTCTCCCCGAGCCAAGCAGGCCCCCAGGCCCTCGTTCTCCACCCGGAACGCAGGAATCGAGGCTCAGGACCGCCGGGAGAACCTGCCTACCTCCCCGCCCTGGACGACCGCCGCGTCCCGGCCCCCCAGCAGCCTGGATGGCTGGGTGAGCCCGGGGCCGTGGGAACCAGGACGCGGGAGCAACATGAGCAGCCCCCCGCCGCTGCCGCCGCCGCCGCCCATGTCCCCCTCGTGGAGCGAGCGCTCCGTGTCCCCGCTGCGACCCGAGATCGAGGTGCGTCCCCCCAGCCGCCAGCTGCAAGCGCTCCTGGCGAGGAACATCATCAACGCGGCCCGGCGCAAGAGCGCCTCCCCGCGGCCGGCGGGCGCCGAGAGTCTGCGACCCTTCTCCCCGCCCAAGGTGCCGCCGGTGCCGCCGGTGCCGCCGCCGCCGCCGCCGCGCATGCGCTCGCCGCAGCCGGTGCGCCCCAGCGCAGGGCCTTCCTGCTTGGCGGCGTTTGCTCGCGTCCAGCGCAGCTCTCTGCAGGCCGCGCCTTCGTCCTGCACCGGTCCCCGGAGCCCACTGCCTGCGCCGCCTAGGCCTCTCCCCTACCGCCGCTCGCCCACGGACTCTGACGTGTCCCTGGACTCCGAGGACTCCGGGGTTAAGTCTCCGGGCATCCTTGGTTACAACATCTGTCCCCGCGGGTGGAACGGCAGCCTGAGGCTCAAACGCGACAGCCTCCCCGCTGAGGCTTCGTGCAGCACCTAG

Related Sequences

XP_004854487.1 Protein

Synpo PREDICTED: synaptopodin isoform X3 [Heterocephalus glaber]

Length: 920 aa      View alignments
>XP_004854487.1
MEGYSEEASLLRHLEKVASEEEEVPLVVYLKENAALLTANGLHLSQNREAQESPPTPPPAEVHSPAADVNQNLSSPSTTITTPASNSNCNLLATDINQNPPVTVIPQSPSLSGVQQNSPAAQNITNGTTPESKTSAPCADGPPQAPVEEVISSVLLIDKVSTPPTTTSTFYREATPIPSSEPPGPDFMSSSLLINIKPSTLVMSAEPEMSGRAPATTPTKVYSEVHLTLAKPLSVVNRTARPFGIQALGGTSQMEQSPMVQRRHLGEKAPAPQPPSVVDRSPRPQRHVMSYSPMVERRLVGQRSPALERRPLGNFTPPPTYAETLSTAPPASRVRSPPSYSALYPSSDTKPSHLKGQAVPTSKTGILEESMARRGSRKSMFTFVEKPKVTPNPDLLDLVQTADEKRRQRDQGDTGAEEEPFALGAEASNFQQEPGSRERASPAAAEEAVPEWASCLKSPRIQAKPKPKPNQNLSEASGKGAELYARRQSRMEKYVIESSGHAELARCPSPTMSLPSSWKYSTSAPGAFRVASLSPARTPPASLYHGYLPENGILRPEPTKQPPYQMRPSLFVLSPIKEPSKASARAPRAASSRAASARAASPRAASPAKPSSLDLVPSLPKAGLPLSPALRRPCRSSPGLCASSGQDGLQPTAVSPTYSSDVSPVSPSRAWSPRAKQAPRPSFSTRNAGIEAQDRRENLPTSPPWTTAASRPPSSLDGWVSPGPWEPGRGSNMSSPPPLPPPPPMSPSWSERSVSPLRPEIEVRPPSRQLQALLARNIINAARRKSASPRPAGAESLRPFSPPKVPPVPPVPPPPPPRMRSPQPVRPSAGPSCLAAFARVQRSSLQAAPSSCTGPRSPLPAPPRPLPYRRSPTDSDVSLDSEDSGVKSPGILGYNICPRGWNGSLRLKRDSLPAEASCST