Sequence details NCBI ID: XM_004854428.1 (Coding sequence)

Details from NCBI annotation

Gene Symbol Synpo
Gene Name synaptopodin, transcript variant X1
Entrez Gene ID 101726425

Database interlinks

Part of NW_004624774.1 (Scaffold)

For more information consult the page for NW_004624774.1 (Scaffold)

Genome Location

Sequence Coding sequence

Length: 3471 bp    Location: 9859579..9912722   Strand: +
Raw sequence   
>XM_004854428.1
ATGCTGGGCCCTCACTTCCCACCCCCAGCCCTTGGGCCCAGCGAAGGGACACCTTCCTCCTGCAGCTTTCAGATCCCTGATGGGAGCTATAGGTGTCTGGCTCTGGAGGCAGAGGAGAGCAGCAGCGAAGAGGGCCTACAGGGAGAGATGGGGCTCACGGACCCTGAAGAGGACAAGGTGGCCTGCAGAGCCACACAAGAGGTCCCACAGCTGACCAGAATCCTGGGCACTTGGCCATCCAGCTGCTCCAGAGAAGCCCAAGGGGGGACCCAGCATGACGATAGGTCCAGCCAGGATTGGGATGTGGTGACAGCCCGGAGGGTGATGATATCCAGCCCCAGTCCTGGTCCTGAGCTCAGGGTGGCCCAGAAACCAGCCTTGGGCCGGAGCACCAGCCTCACCGAGAAGGACCTGAAGGAGGCCAAGGCTCGGAGCCAGCAGATCGCAGCCCAGCTGACCACTCCCCCCAGCTCCAGCTCCCGGGGCGTCCAGCTCTTCAACAGGCGCCGCCAGAGGGTGAATGAATTCACTTGGGAGAGCCAAGGCCAAAGGAGACCGAAGCCCTGCCAGGAGACCCTCAGGGTGCTCCCTGTGCCCCCCCCCGGCCATGCTCCATGGTTCCCCCTGAGTTCACCTTCACCATCCAAGCCAGGCCTTCCAAGGCACCCCAGCCCCCAGATCCCCAGCAGAGGGGTCCCTAGCCACAGCATGGAGGGGTACTCAGAGGAGGCCAGCTTGCTGCGGCACCTGGAGAAGGTGGCCAGTGAGGAGGAAGAGGTGCCACTGGTGGTATATTTGAAGGAGAACGCAGCCCTGCTGACAGCCAATGGGCTTCACCTGTCCCAGAACCGGGAGGCCCAGGAGTCCCCACCAACTCCTCCTCCAGCTGAGGTCCACAGTCCAGCTGCAGATGTCAACCAGAACCTGTCCTCACCCAGCACCACGATCACCACACCAGCTTCTAACAGCAACTGCAACCTGCTGGCCACAGACATCAATCAGAACCCTCCAGTAACTGTCATCCCACAGAGCCCTTCGCTTTCTGGGGTCCAGCAGAATTCTCCTGCTGCACAGAACATAACAAATGGCACAACACCTGAGTCCAAAACCAGCGCCCCATGTGCTGATGGGCCACCCCAGGCGCCGGTGGAGGAGGTGATATCCAGTGTACTCCTAATTGATAAGGTATCTACTCCACCGACTACTACCAGCACCTTCTATAGAGAAGCTACTCCCATCCCCAGCTCTGAGCCTCCAGGTCCAGACTTCATGTCCAGCTCCCTGCTCATCAACATCAAGCCCAGCACCCTAGTGATGTCAGCAGAGCCTGAGATGTCTGGGCGGGCACCTGCCACCACACCCACCAAGGTGTACAGTGAGGTCCACCTCACACTGGCCAAGCCTCTATCAGTGGTCAACAGGACGGCCAGGCCCTTTGGGATCCAGGCACTAGGGGGCACCAGCCAGATGGAGCAGAGTCCCATGGTGCAGAGGCGACATCTTGGGGAGAAAGCCCCGGCTCCCCAGCCCCCCAGCGTGGTAGACAGGAGTCCCCGGCCTCAGAGACATGTCATGTCCTACAGCCCCATGGTGGAGAGGAGGCTGGTGGGGCAGCGAAGCCCGGCCCTGGAGAGACGGCCCTTGGGGAACTTCACCCCTCCTCCCACCTACGCGGAGACCCTGTCCACAGCGCCCCCAGCTTCCCGGGTGCGGTCTCCCCCTTCTTATTCTGCCCTGTACCCTAGCTCTGACACCAAGCCTTCCCATCTGAAGGGCCAGGCAGTTCCCACCAGCAAGACGGGCATTTTAGAGGAGTCCATGGCCCGCCGGGGCAGCCGGAAATCCATGTTCACTTTCGTGGAGAAGCCCAAGGTGACCCCGAACCCAGACCTGCTGGATCTGGTCCAGACGGCCGACGAGAAGCGGAGGCAGAGGGACCAGGGGGACACGGGTGCAGAGGAGGAGCCCTTTGCGCTTGGGGCTGAGGCTTCCAACTTCCAGCAGGAGCCGGGCTCTCGGGAGAGAGCCAGTCCCGCGGCGGCCGAGGAGGCTGTCCCTGAGTGGGCCTCCTGCCTCAAGTCGCCTCGCATCCAAGCCAAGCCGAAGCCCAAACCCAACCAGAACCTCTCGGAGGCCTCTGGGAAGGGCGCGGAGCTCTACGCGCGCCGCCAGTCGCGGATGGAGAAGTACGTCATCGAGTCTTCGGGGCACGCTGAGCTGGCCCGCTGCCCTTCGCCCACCATGTCCCTGCCTTCCTCCTGGAAATACTCCACCAGTGCCCCTGGGGCCTTCCGAGTGGCGTCCCTGAGCCCCGCGCGGACCCCGCCGGCCTCCCTCTACCACGGCTACCTGCCTGAGAACGGCATCCTGCGCCCAGAGCCCACCAAGCAGCCGCCCTACCAGATGCGGCCTTCGCTCTTTGTCCTCTCGCCCATCAAGGAGCCCAGCAAGGCCTCAGCCCGAGCGCCACGAGCGGCCTCATCCAGAGCGGCCTCGGCCCGAGCTGCCTCCCCACGAGCTGCCTCCCCTGCCAAGCCGAGCTCCCTGGACCTGGTGCCCAGCCTTCCCAAAGCCGGGCTCCCGCTGTCTCCGGCTCTGCGTCGGCCCTGCCGCTCCTCGCCGGGCCTCTGCGCTTCCTCTGGCCAGGACGGCCTGCAGCCCACGGCTGTGAGCCCCACCTACAGCAGTGATGTCTCCCCCGTGTCTCCCTCCAGGGCGTGGTCTCCCCGAGCCAAGCAGGCCCCCAGGCCCTCGTTCTCCACCCGGAACGCAGGAATCGAGGCTCAGGACCGCCGGGAGAACCTGCCTACCTCCCCGCCCTGGACGACCGCCGCGTCCCGGCCCCCCAGCAGCCTGGATGGCTGGGTGAGCCCGGGGCCGTGGGAACCAGGACGCGGGAGCAACATGAGCAGCCCCCCGCCGCTGCCGCCGCCGCCGCCCATGTCCCCCTCGTGGAGCGAGCGCTCCGTGTCCCCGCTGCGACCCGAGATCGAGGTGCGTCCCCCCAGCCGCCAGCTGCAAGCGCTCCTGGCGAGGAACATCATCAACGCGGCCCGGCGCAAGAGCGCCTCCCCGCGGCCGGCGGGCGCCGAGAGTCTGCGACCCTTCTCCCCGCCCAAGGTGCCGCCGGTGCCGCCGGTGCCGCCGCCGCCGCCGCCGCGCATGCGCTCGCCGCAGCCGGTGCGCCCCAGCGCAGGGCCTTCCTGCTTGGCGGCGTTTGCTCGCGTCCAGCGCAGCTCTCTGCAGGCCGCGCCTTCGTCCTGCACCGGTCCCCGGAGCCCACTGCCTGCGCCGCCTAGGCCTCTCCCCTACCGCCGCTCGCCCACGGACTCTGACGTGTCCCTGGACTCCGAGGACTCCGGGGTTAAGTCTCCGGGCATCCTTGGTTACAACATCTGTCCCCGCGGGTGGAACGGCAGCCTGAGGCTCAAACGCGACAGCCTCCCCGCTGAGGCTTCGTGCAGCACCTAG

Related Sequences

XP_004854485.1 Protein

Synpo PREDICTED: synaptopodin isoform X1 [Heterocephalus glaber]

Length: 1156 aa      
>XP_004854485.1
MLGPHFPPPALGPSEGTPSSCSFQIPDGSYRCLALEAEESSSEEGLQGEMGLTDPEEDKVACRATQEVPQLTRILGTWPSSCSREAQGGTQHDDRSSQDWDVVTARRVMISSPSPGPELRVAQKPALGRSTSLTEKDLKEAKARSQQIAAQLTTPPSSSSRGVQLFNRRRQRVNEFTWESQGQRRPKPCQETLRVLPVPPPGHAPWFPLSSPSPSKPGLPRHPSPQIPSRGVPSHSMEGYSEEASLLRHLEKVASEEEEVPLVVYLKENAALLTANGLHLSQNREAQESPPTPPPAEVHSPAADVNQNLSSPSTTITTPASNSNCNLLATDINQNPPVTVIPQSPSLSGVQQNSPAAQNITNGTTPESKTSAPCADGPPQAPVEEVISSVLLIDKVSTPPTTTSTFYREATPIPSSEPPGPDFMSSSLLINIKPSTLVMSAEPEMSGRAPATTPTKVYSEVHLTLAKPLSVVNRTARPFGIQALGGTSQMEQSPMVQRRHLGEKAPAPQPPSVVDRSPRPQRHVMSYSPMVERRLVGQRSPALERRPLGNFTPPPTYAETLSTAPPASRVRSPPSYSALYPSSDTKPSHLKGQAVPTSKTGILEESMARRGSRKSMFTFVEKPKVTPNPDLLDLVQTADEKRRQRDQGDTGAEEEPFALGAEASNFQQEPGSRERASPAAAEEAVPEWASCLKSPRIQAKPKPKPNQNLSEASGKGAELYARRQSRMEKYVIESSGHAELARCPSPTMSLPSSWKYSTSAPGAFRVASLSPARTPPASLYHGYLPENGILRPEPTKQPPYQMRPSLFVLSPIKEPSKASARAPRAASSRAASARAASPRAASPAKPSSLDLVPSLPKAGLPLSPALRRPCRSSPGLCASSGQDGLQPTAVSPTYSSDVSPVSPSRAWSPRAKQAPRPSFSTRNAGIEAQDRRENLPTSPPWTTAASRPPSSLDGWVSPGPWEPGRGSNMSSPPPLPPPPPMSPSWSERSVSPLRPEIEVRPPSRQLQALLARNIINAARRKSASPRPAGAESLRPFSPPKVPPVPPVPPPPPPRMRSPQPVRPSAGPSCLAAFARVQRSSLQAAPSSCTGPRSPLPAPPRPLPYRRSPTDSDVSLDSEDSGVKSPGILGYNICPRGWNGSLRLKRDSLPAEASCST